Alignments for a candidate for thrB in Brevundimonas sp. GW460-12-10-14-LB2

Align homoserine kinase (EC 2.7.1.39) (characterized)
to candidate WP_066549664.1 A4249_RS00010 homoserine kinase

Query= reanno::Korea:Ga0059261_3253
         (319 letters)



>NCBI__GCF_001636925.1:WP_066549664.1
          Length = 314

 Score =  241 bits (614), Expect = 2e-68
 Identities = 136/313 (43%), Positives = 183/313 (58%), Gaps = 8/313 (2%)

Query: 1   MAVYTQVSAEALAGFLARYDVGELVSAKGIAEGVENSNYLVETTRDRFILTLYEKRVEAA 60
           MAV+T VS      FLA YD+GE+V    IAEGVEN+NY ++TT+ RF+LTL+E R + A
Sbjct: 1   MAVFTPVSIADAKAFLAGYDIGEVVELTAIAEGVENTNYRLDTTQGRFVLTLFEGRTDEA 60

Query: 61  DLPYFMGLLDHLAAKGLPVPPAIKDRGGVEIQELNGRPACLIKFLSGISLSHPTPAQARA 120
            LP+ +GL  HLAA+G P P  I+DR G  +  LNGR   +I++ +G  L  P+ A   A
Sbjct: 61  SLPFCLGLTAHLAARGFPCPTPIEDRTGGWLGRLNGRAVAVIEWKTGAWLRTPSSADQAA 120

Query: 121 AGEAMAQMHRAVADFPLDRPNSMGVDTWQPLFEKCGHSLDQIVPGLYDDLGFAIARVVPA 180
           AG  +A++H   ADF L R N +G   W+ L ++C  +       L D +  ++AR+   
Sbjct: 121 AGAVLARLHLTAADFDLKRVNPVGPAMWRRLADRCAQAASGEDRRLLDQVNASLARLDDP 180

Query: 181 WTRNDFDRCAIHADLFPDNVLMRGDQVTGLIDFYFACTDIRVYDLAVMHSAWSFDAHGRN 240
           +T  D    AIHAD FPDNVL     V+ +IDFYF C     YDLA+  SAW FDA GR 
Sbjct: 181 FTA-DLPGGAIHADYFPDNVLFEDGAVSAVIDFYFGCIGAFAYDLAIALSAWGFDAEGR- 238

Query: 241 YDPAVGDALIA---GYEASFPLTEVERAAFPTLAAGACIRFSLSRAWDWLNTPADALVMR 297
              A+ DAL A   GYE+  PL   ER A P L   A +RF+++R  D +      LV  
Sbjct: 239 ---AMPDALAAFQRGYESVRPLNGTEREALPRLGEAAALRFTVTRLHDRIFHDPANLVTP 295

Query: 298 KDPLAYVRRLKHY 310
           KDP  ++RR+ H+
Sbjct: 296 KDPAVFLRRMDHW 308


Lambda     K      H
   0.323    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 311
Number of extensions: 16
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 314
Length adjustment: 27
Effective length of query: 292
Effective length of database: 287
Effective search space:    83804
Effective search space used:    83804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate WP_066549664.1 A4249_RS00010 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.19432.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19432.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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