Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_066549952.1 A4249_RS00725 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_001636925.1:WP_066549952.1
Length = 1099
Score = 1265 bits (3273), Expect = 0.0
Identities = 672/1090 (61%), Positives = 812/1090 (74%), Gaps = 40/1090 (3%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKRTDIKSILI+GAGPIVIGQACEFDYSG QACKAL+ EGYRVILVNSNPATIMTDPE+
Sbjct: 1 MPKRTDIKSILIIGAGPIVIGQACEFDYSGVQACKALKAEGYRVILVNSNPATIMTDPEV 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
ADATYIEPI E+V KII KE+PDA+LPTMGGQTALN AL L G L + GV MIGA A
Sbjct: 61 ADATYIEPITPEMVEKIIVKEKPDALLPTMGGQTALNTALALHESGALAKHGVEMIGAKA 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
+ IDKAEDR++F AM K+GLE+ RS AH+MEEAL VG P +IRPSFT+ G+GGG
Sbjct: 121 EVIDKAEDRQKFRDAMDKLGLESPRSKAAHSMEEALEGLEFVGLPAVIRPSFTLAGTGGG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
IA+NREEFEEI RGLDLSPT E+LI+ES++GWKEYEMEVVRD DNCII+CSIEN D M
Sbjct: 181 IAFNREEFEEIVLRGLDLSPTTEVLIEESVLGWKEYEMEVVRDTADNCIIICSIENVDPM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPA TLTDKEYQ MR S+ VLREIGVETGGSNVQ+A+NP +GR++VIEM
Sbjct: 241 GVHTGDSITVAPALTLTDKEYQRMRTGSINVLREIGVETGGSNVQWAINPADGRMVVIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATGFPIAKVAA+LAVGYTLDEL NDIT TPASFEPSIDYVVTKIP
Sbjct: 301 NPRVSRSSALASKATGFPIAKVAARLAVGYTLDELTNDIT-QVTPASFEPSIDYVVTKIP 359
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDP------KVS 414
RF FEK+ G+ L T MKSVGEVMAIGRT QES+QKALRGLE G +GFD +
Sbjct: 360 RFAFEKYPGSEPLLGTSMKSVGEVMAIGRTFQESMQKALRGLETGLSGFDEIEIEGVAGA 419
Query: 415 LDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEE 474
DD A + R L DRI IA AFR GL+V+ V + + WFL QI ++VR E
Sbjct: 420 EDDATARGAVVRALGVPTPDRIRVIAQAFRHGLTVEEVNAACSYEPWFLRQIADIVREEG 479
Query: 475 KVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAA 534
V G+ +F R+LK KGF+DARLA+L G E +R R ++ PV+KR+DTCAA
Sbjct: 480 HVRVKGLPTDPTEF-RRLKSKGFSDARLAQLTGQSEKSVRTARRGLNVRPVFKRIDTCAA 538
Query: 535 EFATDTAYMYSTYE-------EECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASL 587
EFA+ TAYMYSTYE ECE+ P T+++K ++LGGGPNRIGQGIEFDYCC HA+
Sbjct: 539 EFASATAYMYSTYETGALGQIPECESEP-TNKKKAIILGGGPNRIGQGIEFDYCCCHAAF 597
Query: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPK----GVIVQYG 643
A + G E+IMVNCNPETVSTDYDTSDRLYFEP+T EDVLE++ +E+ G +VQ+G
Sbjct: 598 AFGQIGVESIMVNCNPETVSTDYDTSDRLYFEPLTAEDVLELIEVERSNGDLIGCVVQFG 657
Query: 644 GQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVE 703
GQTPLKLA AL+ +PV+GTS D+ID AEDRERFQ +E + L+QP N + E A +
Sbjct: 658 GQTPLKLAHALQEDDIPVLGTSVDSIDLAEDRERFQQMLEGIGLRQPPNGLARSAEEAAQ 717
Query: 704 KAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVD 763
A+E+GYP+V+RPSYVLGGR M IV+D L RY A+ VS D PVL+DH+L+ A EVD
Sbjct: 718 TAEEVGYPVVLRPSYVLGGRGMMIVHDREQLDRYVHEAMRVSGDDPVLIDHYLNRATEVD 777
Query: 764 VDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVR 823
VDA+CD E V + G++EHIE+AGVHSGDSACS+P ++L EI D +++Q ++A L+VR
Sbjct: 778 VDALCDDETVFVAGVLEHIEEAGVHSGDSACSMPPFSLRPEIVDELKRQTTEMAKALKVR 837
Query: 824 GLMNVQFAV-----KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQG 878
GLMNVQFA+ +N ++++EVNPRA+RT PFV+K G P+A +AA+VMAG L G
Sbjct: 838 GLMNVQFAIEEPHSENPRIFVLEVNPRASRTAPFVAKTIGQPIASIAAKVMAGVPLKSFG 897
Query: 879 VTKEVIPPY--YSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMG----------VGRTFAE 926
+T + PY +VKE V PF +F GVD +LGPEMRSTGEVMG + FA
Sbjct: 898 LTDK---PYDHIAVKEAVFPFARFAGVDTVLGPEMRSTGEVMGLDFKRPGEADMAPAFAR 954
Query: 927 AFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGI 986
AFAK+Q+G +T+ G A +SV++ DK +VD A LL +GF L AT GT L E G+
Sbjct: 955 AFAKSQIGGGTTLPTSGCAFISVKDEDKPFIVDAARTLLAEGFSLMATGGTHAYLVEQGL 1014
Query: 987 NPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNG 1046
+LV KV EGRPHI D +KNGE + NTTSG+++++DS +RR+AL K+ Y TT G
Sbjct: 1015 EVKLVKKVLEGRPHIVDAMKNGEVQLVFNTTSGKQSLQDSFSLRRTALMMKMPYYTTTAG 1074
Query: 1047 GFATAMALNA 1056
A A A+ A
Sbjct: 1075 ALAAAQAIGA 1084
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3094
Number of extensions: 159
Number of successful extensions: 20
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1099
Length adjustment: 46
Effective length of query: 1027
Effective length of database: 1053
Effective search space: 1081431
Effective search space used: 1081431
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_066549952.1 A4249_RS00725 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.19931.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19931.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.