Alignments for a candidate for gatB in Brevundimonas sp. GW460-12-10-14-LB2

Align glutamyl-tRNA^Gln amidotransferase subunit B (EC 6.3.5.7) (characterized)
to candidate WP_066551291.1 A4249_RS04290 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB

Query= metacyc::MONOMER-13956
         (476 letters)



>NCBI__GCF_001636925.1:WP_066551291.1
          Length = 497

 Score =  408 bits (1049), Expect = e-118
 Identities = 218/480 (45%), Positives = 307/480 (63%), Gaps = 14/480 (2%)

Query: 2   NFETVIGLEVHVELKTKSKIFSSSPTPFGAEANTQTSVIDLGYPGVLPVLNKEAVEFAMK 61
           ++E V+GLE+H ++ +K+K+FS +   FGA  N Q S++D G+PG+LP LNK  VE A+K
Sbjct: 14  DWEIVMGLEIHAQVASKAKLFSGAAVGFGAGPNEQVSLVDAGFPGMLPTLNKHCVEQAVK 73

Query: 62  AAMALNCEIATDTKFDRKNYFYPDNPKAYQISQFDKPIGENGWIEIEV-GGKTKRIGITR 120
             + L  +I   ++FDRKNYFYPD P  YQISQ   PI   G +E+E   G    +GI R
Sbjct: 74  TGLGLRAQINRRSQFDRKNYFYPDLPTGYQISQLYYPIVGEGVVEVEAEDGSFFNVGIER 133

Query: 121 LHLEEDAGKLTHT-GDGYSLVDFNRQGTPLVEIVSEPDIRTPEEAYAYLEKLKSIIQYTG 179
           LHLE+DAGKL H      S VD NR GT L+EIVS PD+RTP+EA AY++K+++I+ Y G
Sbjct: 134 LHLEQDAGKLIHDLSPTESYVDLNRAGTALMEIVSRPDLRTPDEAVAYVKKIRTILIYLG 193

Query: 180 VSDCKMEEGSLRCDANISLRPIGQEE----------FGTKTELKNLNSFAFVQKGLEHEE 229
             D  ME+G+LR D N+S+   G  +           GT+ E+KN+NSF F+ + +++E 
Sbjct: 194 TCDGDMEKGNLRADVNVSVCRAGNYDKFKKTGDFSYLGTRCEIKNVNSFRFISQAIQYEA 253

Query: 230 KRQEQVLLSGFFIQQETRRYDEATKKTILMRVKEGSDDYRYFPEPDLVELYIDDEWKERV 289
           +RQ ++L  G  I QETR YD    +T  MR KE + DYRYFP+PDL+ L +++ W   +
Sbjct: 254 RRQIEILEDGSSITQETRLYDPTAGETRSMRSKEEAQDYRYFPDPDLLPLDLEEAWIAEI 313

Query: 290 KASIPELPDERRKRYIEELGFAAYDAMVLTLTKEMADFFEETVQKGAEAKQASNWLMGEV 349
           KAS+PELPD++RKR + + G + YDA+VL   +  AD+F E   KG +AK  SNW+  EV
Sbjct: 314 KASLPELPDDKRKRLMADYGLSQYDAIVLISEQAKADYF-EAAAKGRDAKLVSNWVTNEV 372

Query: 350 SAYLNAEQKELADVALTPEGLAGMIKLIEKGTISSKIAKKVFKELIEKGGDAEKIVKEKG 409
           SA L AE K+ ++  L    +A +++LIE   ISSKIAK+VF  +    G   ++V++ G
Sbjct: 373 SARLAAEGKDFSENTLPAAHVAQLVELIETNVISSKIAKEVFDHVWNGEGSPAEVVEKHG 432

Query: 410 LVQISDEGVLLKLVTEALDNNPQSIEDFKNGKDRAIGFLVGQIMKASKGQANPPMVNKIL 469
           L Q++D G + K V E +  NP         K +AIG+ VGQ+MKA+ G+ANP  VN IL
Sbjct: 433 LKQVTDTGAIEKAVDEIIAANPDKAAAVAE-KPQAIGWFVGQVMKATGGKANPAAVNDIL 491


Lambda     K      H
   0.314    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 636
Number of extensions: 28
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 497
Length adjustment: 34
Effective length of query: 442
Effective length of database: 463
Effective search space:   204646
Effective search space used:   204646
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)

Align candidate WP_066551291.1 A4249_RS04290 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.4634.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4634.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.