Alignments for a candidate for ilvC in Brevundimonas sp. GW460-12-10-14-LB2

Align Ketol-acid reductoisomerase (NADP(+)); KARI; Acetohydroxy-acid isomeroreductase; AHIR; Alpha-keto-beta-hydroxylacyl reductoisomerase; Ketol-acid reductoisomerase type 1; Ketol-acid reductoisomerase type I; EC 1.1.1.86 (characterized)
to candidate WP_066551444.1 A4249_RS05080 ketol-acid reductoisomerase

Query= SwissProt::Q9HVA2
         (338 letters)



>NCBI__GCF_001636925.1:WP_066551444.1
          Length = 344

 Score =  317 bits (811), Expect = 4e-91
 Identities = 162/322 (50%), Positives = 211/322 (65%), Gaps = 1/322 (0%)

Query: 3   VFYDKDCDLSIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGL 61
           VF+D+DCDLSII+GK+VA+IGYGSQG  HA NL+DSGV ++ VGL++ S T   A A G 
Sbjct: 11  VFHDRDCDLSIIRGKRVAMIGYGSQGRTHALNLRDSGVTEIVVGLKADSKTRDLARADGF 70

Query: 62  KVADVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVPRAD 121
           +V     A + ADVV ++T DE    L+++E+EPN++ GA L FAHG S+ +  V PR D
Sbjct: 71  EVMTAAQAASGADVVAVMTSDEAHRDLWRDELEPNVRPGAALVFAHGLSVRFGLVEPRTD 130

Query: 122 LDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGGRTGIIET 181
           LDVI+ +PK  G  +R  +  G G+  L  + QDA+G+A  + LSYA  +G GR GI+ET
Sbjct: 131 LDVILASPKGIGPRIRDLYEAGEGVFCLFGVQQDATGSAHALGLSYAAALGCGRKGILET 190

Query: 182 TFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEG 241
           T +DE E+DLFGEQ VLCGG  EL+ A F  LV AGY PE+A+FEC +E KL+ DLMYE 
Sbjct: 191 TMRDECESDLFGEQVVLCGGIAELIDAAFMKLVNAGYPPEVAWFECFYETKLVTDLMYER 250

Query: 242 GIANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPSM 301
           GIA     ISN AEYG Y+TGP VI  ES  AM   L  IQ G + +  + +  A  P +
Sbjct: 251 GIAGAFAKISNTAEYGAYLTGPRVIGDESHQAMGEVLAAIQSGAFVRRLMADYDAGSPDL 310

Query: 302 TAYRRNNAAHPIEQIGEKLRAM 323
           TA R+      IE +G  L A+
Sbjct: 311 TARRKALGVKTIESVGAHLNAV 332


Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 311
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 344
Length adjustment: 29
Effective length of query: 309
Effective length of database: 315
Effective search space:    97335
Effective search space used:    97335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_066551444.1 A4249_RS05080 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.23479.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23479.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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