Alignments for a candidate for ilvC in Brevundimonas sp. GW460-12-10-14-LB2

Align ketol-acid reductoisomerase (NAD+) (EC 1.1.1.382); ketol-acid reductoisomerase (NADP+) (EC 1.1.1.86) (characterized)
to candidate WP_066552365.1 A4249_RS10025 ketol-acid reductoisomerase

Query= BRENDA::C8WR67
         (344 letters)



>NCBI__GCF_001636925.1:WP_066552365.1
          Length = 337

 Score =  362 bits (929), Expect = e-105
 Identities = 183/329 (55%), Positives = 231/329 (70%), Gaps = 1/329 (0%)

Query: 4   IYYDADISIQPLADKRIAVIGYGSQGHAHAQNLRDSGFDVVIGLRPGSS-WAKAEADGFR 62
           IY + DI    +A +RIA+IGYGSQG AHAQNL+DSG DVV G+R G + W  A ADG  
Sbjct: 5   IYTNEDIKPGAIAGQRIAIIGYGSQGRAHAQNLKDSGHDVVAGVRHGGTGWKHATADGVP 64

Query: 63  VMAVGEAVEESDVIMILLPDERQPAVYEREIRPYLTAGKALAFAHGFNIHFSQIQPPKDV 122
                EAV+ +D+I IL PD  Q  VY   I P    G AL FAHGF+I + +I P +D+
Sbjct: 65  TAEPAEAVKGADIIAILTPDMVQGDVYRDIIEPNAKEGSALLFAHGFSIIYERITPREDM 124

Query: 123 DVFMVAPKGPGHLVRRVYEAGGGVPALIAVHQDASGQAKDLALAYARGIGAGRAGILTTT 182
           DV +VAPKGPG LVRR ++ G GVP+L AV +D +G+A+D A+ YA+G G    G+L TT
Sbjct: 125 DVILVAPKGPGDLVRREFQRGRGVPSLFAVEKDVTGKARDRAMGYAKGNGGATGGLLETT 184

Query: 183 FREETETDLFGEQAVLCGGLSALIKAGFETLVEAGYQPEIAYFECLHEMKLIVDLIYEGG 242
           FREETETDLFGEQAVLCGG   L+  GF TLVEAGYQPEIAYFECLHE+KLIVDL YEGG
Sbjct: 185 FREETETDLFGEQAVLCGGAKELVIQGFNTLVEAGYQPEIAYFECLHELKLIVDLFYEGG 244

Query: 243 LEYMRYSISDTAQWGDFTSGPRIINEETKKEMRRILADIQSGAFAKSWILENQANRPMFN 302
           +  M + IS+TA++G   SGPR++NEETK  M+ IL +IQ G FA++WI EN+A +P + 
Sbjct: 245 ISKMHHFISETAKYGAVASGPRVVNEETKARMKTILDEIQDGTFARNWIAENEAGKPQYE 304

Query: 303 AINRRELEHPIEVVGRKLRSMMPFIKAKR 331
           A  + + E  IE VG +LR  M ++   +
Sbjct: 305 AWLKADRESHIEQVGARLRERMAWLNTPK 333


Lambda     K      H
   0.320    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 385
Number of extensions: 15
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 337
Length adjustment: 28
Effective length of query: 316
Effective length of database: 309
Effective search space:    97644
Effective search space used:    97644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_066552365.1 A4249_RS10025 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.20585.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20585.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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