Alignments for a candidate for carA in Brevundimonas sp. GW460-12-10-14-LB2

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_066554506.1 A4249_RS16140 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_001636925.1:WP_066554506.1
          Length = 386

 Score =  373 bits (957), Expect = e-108
 Identities = 196/380 (51%), Positives = 251/380 (66%), Gaps = 15/380 (3%)

Query: 4   SALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNV 63
           + +L L DGT   G  +GA GSA+GEVVFNT+MTGYQEILTDPSY  QI+  T+PH+GNV
Sbjct: 10  TGVLALADGTILQGIGVGAVGSALGEVVFNTAMTGYQEILTDPSYMSQILAFTFPHVGNV 69

Query: 64  GTNDADEES----SQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLT 119
           GTN  D E     S   A+G + RD+P   +N+R+      ++KR  +V +A +DTR LT
Sbjct: 70  GTNVEDIEQMGGGSDTSARGAIFRDVPTDPANYRSDASFDDWMKRRGVVGLAGVDTRALT 129

Query: 120 RLLREKGAQNGCIIAGDNPDAALALE----KARAFPGLNGMDLAKEVTTAEAYSWTQGSW 175
           +++R+KGA +  +IA D PD    LE    +A+ + GL G+DLAK  +T +A+ W +G W
Sbjct: 130 KIIRDKGAPHA-VIAHD-PDGNFDLEALVAQAKGWTGLVGLDLAKPASTLQAFEWNEGLW 187

Query: 176 TLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDG 235
               G P+ +   +    VV  D+G KRNILR L   G R+T+VPA T+AE+VL  NPDG
Sbjct: 188 DWPEGHPKTEGRKD----VVVIDYGVKRNILRALASTGARITVVPATTTAEEVLARNPDG 243

Query: 236 IFLSNGPGDPAPC-DYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGN 294
           + LSNGPGDPA   +YA+  IQK + +  P+ GICLGHQ+LALA GAKTVKM  GHHG N
Sbjct: 244 VVLSNGPGDPAATGEYAVPEIQKLVASGKPLMGICLGHQMLALALGAKTVKMDQGHHGAN 303

Query: 295 HPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHP 354
           HPVKD+    V I + NHGF VD  +LP  +  TH SLFDGT  GI   DKP FS Q HP
Sbjct: 304 HPVKDLTTGKVEIVSMNHGFTVDRDSLPDAVTETHVSLFDGTNCGIAVKDKPIFSVQHHP 363

Query: 355 EASPGPHDAAPLFDHFIELI 374
           EASPGP D+  LFD F +L+
Sbjct: 364 EASPGPTDSLYLFDRFADLM 383


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 489
Number of extensions: 20
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 386
Length adjustment: 30
Effective length of query: 352
Effective length of database: 356
Effective search space:   125312
Effective search space used:   125312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_066554506.1 A4249_RS16140 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.23033.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23033.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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