Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_068111339.1 I601_RS14935 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_001653335.1:WP_068111339.1
Length = 1113
Score = 1090 bits (2818), Expect = 0.0
Identities = 592/1113 (53%), Positives = 764/1113 (68%), Gaps = 51/1113 (4%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKR DIKS++++G+GPIVIGQACEFDYSG QAC+ L++EG RVILVNSNPATIMTDPE
Sbjct: 1 MPKREDIKSVMVIGSGPIVIGQACEFDYSGTQACRVLKDEGLRVILVNSNPATIMTDPEF 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
ADATY+EPI E V K+I KERPDA+L T+GGQTALN A+ L+ GVLE++ V +IGA+
Sbjct: 61 ADATYVEPITPEFVEKVIAKERPDALLATLGGQTALNAAMALDAAGVLEKYDVELIGASI 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
+AID+ E+R+ F ++ +G E+ARS I H+M++ LA ++G+P ++RPSFTMGG+G G
Sbjct: 121 EAIDRGENRQVFKKIVESLGGESARSVICHSMDDCLAAVDELGYPMVVRPSFTMGGTGSG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
+AY+ + I GL SPT E+L++ES++GWKEYE+EV+RD DN +IVCSIEN D M
Sbjct: 181 MAYDENDLRRIAGAGLSASPTTEVLLEESILGWKEYELEVMRDTADNVVIVCSIENLDPM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPA TLTD+EYQ MR+ ++ ++RE+GV+TGG N+Q+AVNP++GRL+VIEM
Sbjct: 241 GVHTGDSITVAPAMTLTDREYQHMRDMAIGIIREVGVDTGGCNIQYAVNPRDGRLVVIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDIT----GGRTPASFEPSIDYVV 356
NPRVSRSSALASKATG+PIAK+AAK+A+GYTLDE+ NDIT G TPA+FEP++DYVV
Sbjct: 301 NPRVSRSSALASKATGYPIAKIAAKVAIGYTLDEIPNDITVRADGSSTPAAFEPTLDYVV 360
Query: 357 TKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFD---PKV 413
K+PRF FEKF GA+ LTT MKSVGE M+IGR E+LQKALR LE FD +V
Sbjct: 361 VKVPRFAFEKFPGADPTLTTHMKSVGEAMSIGRNFTEALQKALRSLESKDAVFDWEKDEV 420
Query: 414 SLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLE 473
+LD L I R+ + DA RAG S + VF+ T ID WF +++L +
Sbjct: 421 TLDKAALLEAI----STPHDGRLRKVMDAIRAGASPEEVFDATGIDPWF---VDQLALIN 473
Query: 474 EKVAEV-GITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTC 532
E EV L LR+ KR GF+D ++ K+ G+ +R +R + PV+K VDTC
Sbjct: 474 EIAVEVTAAPELTPTLLRRAKRHGFSDHQIGKIRGMSADVVRGVRHALGIRPVFKTVDTC 533
Query: 533 AAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALRED 592
AAEFA T Y YSTY+EE E P ++ +++LG GPNRIGQGIEFDY CVHASLAL E
Sbjct: 534 AAEFAAATPYHYSTYDEESEVLP-REKGAVIILGSGPNRIGQGIEFDYSCVHASLALSEV 592
Query: 593 GYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPK----GVIVQYGGQTPL 648
GYET+MVNCNPETVSTDYDTSDRLYFEP+TLEDVLE+V E GVI Q GGQTPL
Sbjct: 593 GYETVMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVHAEMAAGPVIGVICQLGGQTPL 652
Query: 649 KLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEI 708
LA+ L GVP++GTSPDAID AE+R F + + L P + T T+ A A EI
Sbjct: 653 GLAQGLARNGVPIVGTSPDAIDLAEERGAFGRVLAQAGLVAPKHGTATSYVEAQRIAAEI 712
Query: 709 GYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVS---VSNDAPVLLDHFLDDAVEVDVD 765
GYP++VRPSYVLGGR MEIVYD+ L Y + V+ +S++APVL+D FLDDAVE+DVD
Sbjct: 713 GYPVLVRPSYVLGGRGMEIVYDDEALEAYLEKYVAAGLISHEAPVLVDRFLDDAVEIDVD 772
Query: 766 AICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGL 825
AI DGE + +GG+MEHIE+AG+HSGDS+C+LP TL + +R+ + +A + V GL
Sbjct: 773 AIFDGEELFLGGVMEHIEEAGIHSGDSSCALPPITLGELEIGRIREATEAIARGVGVLGL 832
Query: 826 MNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIP 885
+N+QFA+ ++ +Y++E NPRA+RTVPFVSKAT PLAK AARVM G+S+A+ T ++P
Sbjct: 833 INIQFALGSDILYVLEANPRASRTVPFVSKATATPLAKAAARVMLGESIADLR-TAGLLP 891
Query: 886 PY-----------YSVKEVVLPFNKF-----PGVDPLLGPEMRSTGEVMGVGRTFAEAFA 929
+VKE V+PFN+F VD +LGPEM+STGEVMG R F AFA
Sbjct: 892 ATGDGGSLPADQPIAVKEAVMPFNRFRTPDGAQVDTVLGPEMKSTGEVMGFDRDFGTAFA 951
Query: 930 KAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPR 989
K Q + + G+ +S+ DK ++ L GFE+ AT GTA VL G+
Sbjct: 952 KGQAAAFGPLPTSGKVFVSMANRDKRSMIFPVKVLADMGFEILATQGTAEVLRRNGVAAA 1011
Query: 990 LVNKVHEGRPHIQDR-----IKNGEYTYIINTT----SGRRAIEDSRVIRRSALQYKVHY 1040
+V K +EG +R I +GE I+NT G A D IR +A+ V
Sbjct: 1012 VVRKHYEGEGSEGERTAVQLIHDGEIQLIVNTPYGAGGGGHARLDGYEIRTAAVMANVPC 1071
Query: 1041 DTTLNGGFATAMALNA--DATEKVISVQEMHAQ 1071
TT+ G A + A +V S+Q+ AQ
Sbjct: 1072 LTTVQGLGAAVQGIEAMRRGDIEVRSLQDWAAQ 1104
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3064
Number of extensions: 145
Number of successful extensions: 20
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1113
Length adjustment: 46
Effective length of query: 1027
Effective length of database: 1067
Effective search space: 1095809
Effective search space used: 1095809
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_068111339.1 I601_RS14935 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.4557.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4557.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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