Alignments for a candidate for argC in Nocardioides dokdonensis FR1436

Align N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) (characterized)
to candidate WP_068111444.1 I601_RS15140 N-acetyl-gamma-glutamyl-phosphate reductase

Query= BRENDA::P9WPZ9
         (352 letters)



>NCBI__GCF_001653335.1:WP_068111444.1
          Length = 345

 Score =  425 bits (1093), Expect = e-124
 Identities = 211/346 (60%), Positives = 258/346 (74%), Gaps = 9/346 (2%)

Query: 11  KVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVV 70
           +VAVAGASGYAGGE+LRLLL HP      + IGALT A++AG  LG   PHL PLA RV+
Sbjct: 5   RVAVAGASGYAGGEVLRLLLSHP-----EVEIGALTGASNAGQPLGALQPHLVPLADRVL 59

Query: 71  EPTEAAVLGGHDAVFLALPHGHSAVLAQQLSPETLIIDCGADFRLTDAAVWERFYGSSHA 130
           EPT   VL GHD VFLALPHG S  +A QL  +T++IDCGADFRL DA  W +FYG  HA
Sbjct: 60  EPTTIEVLSGHDVVFLALPHGQSGEVAAQLGDDTVVIDCGADFRLRDAGEWAKFYGGEHA 119

Query: 131 GSWPYGLPELPGARDQLRGTRRIAVPGCYPTAALLALFPALAADLIEPAVTVVAVSGTSG 190
           G+WPYGLPELPG R +LRG RRIAVPGCYPT + L+L PA+AA ++EP V++VA SGTSG
Sbjct: 120 GTWPYGLPELPGQRQELRGARRIAVPGCYPTVSTLSLAPAVAAGIVEPRVSIVAASGTSG 179

Query: 191 AGRAATTDLLGAEVIGSARAYNIAGVHRHTPEIAQGLRAVTDRDVSVSFTPVLIPASRGI 250
           AG+AA + LLG+E++G+A AY + G HRHTPEI Q L A+ D  V+VSFTP+L+P SRGI
Sbjct: 180 AGKAAKSHLLGSEIMGNASAYGVGGDHRHTPEITQNLSALVDETVAVSFTPLLVPMSRGI 239

Query: 251 LATCTARTRS----PLSQLRAAYEKAYHAEPFIYLMPEGQLPRTGAVIGSNAAHIAVAVD 306
           LATC+A  R+       +  A Y +AY  EPF++++P GQ P+T +VIGSNA H+ V VD
Sbjct: 240 LATCSADLRAGHEVDAEEAHAIYAQAYAHEPFVHVLPRGQWPQTKSVIGSNALHLQVTVD 299

Query: 307 EDAQTFVAIAAIDNLVKGTAGAAVQSMNLALGWPETDGLSVVGVAP 352
           E A   VA+ A+DNL KGTAGAAVQ MNLALG  E  GL+ +G+AP
Sbjct: 300 EVAGRLVAVGAVDNLAKGTAGAAVQCMNLALGLDEGTGLTTIGLAP 345


Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 446
Number of extensions: 31
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 345
Length adjustment: 29
Effective length of query: 323
Effective length of database: 316
Effective search space:   102068
Effective search space used:   102068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_068111444.1 I601_RS15140 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.10625.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10625.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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