Alignments for a candidate for asp-kinase in Hyphomicrobium sulfonivorans WDL6

Align Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_068462230.1 APY04_RS10130 aspartate kinase

Query= SwissProt::A4VJB4
         (412 letters)



>NCBI__GCF_001541235.1:WP_068462230.1
          Length = 420

 Score =  393 bits (1009), Expect = e-114
 Identities = 219/420 (52%), Positives = 287/420 (68%), Gaps = 16/420 (3%)

Query: 1   MALIVQKFGGTSVGTVERIEQVAEKVKKFRDGGDDIVVVVSAMSGETNRLIDLAKQISEQ 60
           MA++V KFGGTSV  VERI  VA  VK+  D G+ + VVVSAMSG TN+L+   ++ S  
Sbjct: 1   MAVVVMKFGGTSVANVERIRNVARHVKREVDAGNKVCVVVSAMSGVTNQLVAYVREASLL 60

Query: 61  PVPRELDVMVSTGEQVTIALLAMALIKRGVPAVSYTGNQVRILTDSAHTKARILQIDAQR 120
              RE D +V+TGEQVT  LLA+ L   G+ A S+ G QV I   +AH  ARI  ID   
Sbjct: 61  HDAREYDAVVATGEQVTAGLLAIVLQSMGLQARSWQGWQVPITASAAHGSARITGIDGSE 120

Query: 121 IQRDIKAGRVVVVAGFQGVD-EKGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVY 179
           I R  ++  V VV GFQG++ E+  + TLGRGGSDT+ VA+A ALKAD C IYTDVDGVY
Sbjct: 121 ILRRFESDEVAVVTGFQGIEPERQRVATLGRGGSDTSAVAMAVALKADVCDIYTDVDGVY 180

Query: 180 TTDPRVVAKAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYSVPLRVLHSF------- 232
           TTDPR+VAKA+RL KI++EEMLEMASLGSKVLQ R+VE A  + + +RVL SF       
Sbjct: 181 TTDPRIVAKAKRLPKISYEEMLEMASLGSKVLQTRSVELAMNHRMRVRVLSSFVAPEAMA 240

Query: 233 ------QEGPGTLITLDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISA 286
                  E  GT++  DE+E +E  ++SGIA+ +DEAK+T+  V D PG+A +I GP++ 
Sbjct: 241 PVRLGQLEDIGTVV-CDEDEIVESQVVSGIAYVKDEAKVTLIKVEDKPGIAARIFGPLAD 299

Query: 287 ANVEVDMIVQNVAHDNT-TDFTFTVHRNDYNNALQVLQGIAAEMGAREAIGDTNIAKVSI 345
           AN+ VDMIVQ+V  D   TD TFTV   +    L+ L+   +E+G  E     ++AK+S+
Sbjct: 300 ANINVDMIVQSVTPDGKHTDMTFTVQATELPRTLETLKAAKSEIGEFEIQSSADVAKISV 359

Query: 346 VGVGMRSHAGVASRMFEALAKENINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELDA 405
           +G+GMRSHAGVA+ MF+AL+ + INI  I+TSEIK+SV+I+  Y ELAVR LH+ + LDA
Sbjct: 360 IGIGMRSHAGVAALMFKALSDKGINILAITTSEIKISVLIDAAYAELAVRTLHSIYGLDA 419


Lambda     K      H
   0.317    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 397
Number of extensions: 10
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 420
Length adjustment: 31
Effective length of query: 381
Effective length of database: 389
Effective search space:   148209
Effective search space used:   148209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_068462230.1 APY04_RS10130 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.16244.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16244.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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