Alignments for a candidate for thrC in Hyphomicrobium sulfonivorans WDL6

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_068462681.1 APY04_RS11275 threonine synthase

Query= BRENDA::Q8YFS0
         (463 letters)



>NCBI__GCF_001541235.1:WP_068462681.1
          Length = 468

 Score =  536 bits (1381), Expect = e-157
 Identities = 278/464 (59%), Positives = 333/464 (71%), Gaps = 2/464 (0%)

Query: 1   MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLT 60
           M Y+STRGEAP+LGF D +LAGLARDGGLY+P+ +P  + E+I +  G  + +VA  V+ 
Sbjct: 1   MNYISTRGEAPLLGFEDVVLAGLARDGGLYVPETWPTLSPEKIASFAGMPFADVAAEVIA 60

Query: 61  PFTGGEIPAADFERMVREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLLA 120
           PFTGG I   +   M  +AY  F H AV PLVQ   N FVLELFHGPTLAFKDVAMQLLA
Sbjct: 61  PFTGGAITRDELRAMAADAYSGFGHSAVTPLVQIGPNRFVLELFHGPTLAFKDVAMQLLA 120

Query: 121 RMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSS 180
           R+M+ VLA RG+RATIVGATSGDTGGAAIEAF G  + D+ ILFP GRVS VQ+R MT+ 
Sbjct: 121 RLMERVLAARGQRATIVGATSGDTGGAAIEAFRGSPHVDVAILFPEGRVSDVQRRMMTTP 180

Query: 181 GFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARIMPQVVYYFTAALS 240
              NVHA+S+ GNFDDCQ+LVK MFND  F D +SL+GVNSINWARI  QV YYF A  +
Sbjct: 181 TEGNVHAISVRGNFDDCQSLVKAMFNDHGFRDRISLAGVNSINWARIAAQVTYYFVAGAA 240

Query: 241 LGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGAYEMRGV 300
           LGAP R VSF VPTGNFGDIFAGYVAKRMGLPIE+L+IA+N NDIL RTL++GAY+MRGV
Sbjct: 241 LGAPFRPVSFVVPTGNFGDIFAGYVAKRMGLPIEKLVIASNVNDILPRTLDNGAYQMRGV 300

Query: 301 AQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSA 360
             T+SPSMDIQISSNFER LFEA GRDA  +R  M  L+++GGF +      A+R EF A
Sbjct: 301 VATSSPSMDIQISSNFERYLFEASGRDAPFIRAKMSALRETGGFDLGPVK-DAMRREFGA 359

Query: 361 GRSTVDETAATIESVLSKDGYLLDPHSAIGVKVA-REKASGTAPMVVLATAHPAKFPDAV 419
             ++  + A  I    +  GY+ DPH+A  +  A R    G AP VVL+TAHPAKFPDA+
Sbjct: 360 SAASEQDVAEAIMRTRAATGYVADPHTACAIVAAERVLGEGGAPQVVLSTAHPAKFPDAM 419

Query: 420 KAACGVEPQLPAWLCDLMQRKESFTVLHNELKIVEEYVRHHSRA 463
           +   G  P LP  L  LM  KE FT + N++   E +V   +RA
Sbjct: 420 EDITGERPGLPPRLSTLMTDKERFTTIDNDIAAAEAHVEALTRA 463


Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 629
Number of extensions: 27
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 468
Length adjustment: 33
Effective length of query: 430
Effective length of database: 435
Effective search space:   187050
Effective search space used:   187050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_068462681.1 APY04_RS11275 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.27566.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27566.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.