Alignments for a candidate for hisF in Hyphomicrobium sulfonivorans WDL6

Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate WP_068462882.1 APY04_RS11855 imidazole glycerol phosphate synthase subunit HisF

Query= BRENDA::Q5NMD6
         (255 letters)



>NCBI__GCF_001541235.1:WP_068462882.1
          Length = 256

 Score =  338 bits (868), Expect = 5e-98
 Identities = 168/254 (66%), Positives = 202/254 (79%), Gaps = 5/254 (1%)

Query: 3   LCTRIIPCLDVADGRVVKGVNFTDLMDAGDPVEQAKVYDAAGADELCFLDISASHEGRGT 62
           L  RIIPCLDV DGRVVKGVNF DL+DAGDPVE A  YDAAGADELCFLDI+A+HEGR  
Sbjct: 2   LKNRIIPCLDVKDGRVVKGVNFVDLIDAGDPVEAAAAYDAAGADELCFLDITATHEGRDN 61

Query: 63  MLDVVARTAEVCFMPLTVGGGVRQVEDARALLLAGADKVAVNSAAVARPELVAEIADRFG 122
           +  VV +TA+ CFMPLTVGGGVR V+D   LL AGADKV++NSAAV  P  V + +++FG
Sbjct: 62  IFHVVEQTAKRCFMPLTVGGGVRTVDDISRLLNAGADKVSINSAAVKNPLFVRDASEKFG 121

Query: 123 AQCVVAAIDARR-----NGDHWEVYTHGGRRPTGINALDHALNLTRLGAGEILLTSMDKD 177
           AQC+V AIDA+R         WE++THGGR  TGI+A+D A  +T LGAGEILLTSMD+D
Sbjct: 122 AQCIVVAIDAKRVSAQGEPPRWEIFTHGGRSSTGIDAVDFAKRVTELGAGEILLTSMDRD 181

Query: 178 GTRDGYDLELTRLVADSVPVPVIASGGVGNLDHMVEGVTKGHASALLAASIFHFGQYSLA 237
           GT+ G+DLELTR VAD+V +PVIASGGVG LDH+V G+T+GHASA+LAASIFHFG Y++ 
Sbjct: 182 GTKSGFDLELTRTVADAVSIPVIASGGVGTLDHLVAGITEGHASAVLAASIFHFGTYTIG 241

Query: 238 EAHEALAKAGLTVR 251
           EA   +A AG+ +R
Sbjct: 242 EAKRYMADAGIPMR 255


Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 280
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 256
Length adjustment: 24
Effective length of query: 231
Effective length of database: 232
Effective search space:    53592
Effective search space used:    53592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate WP_068462882.1 APY04_RS11855 (imidazole glycerol phosphate synthase subunit HisF)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.19386.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19386.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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