Alignments for a candidate for asd in Hyphomicrobium sulfonivorans WDL6

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_068462935.1 APY04_RS12025 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_001541235.1:WP_068462935.1
          Length = 342

 Score =  325 bits (833), Expect = 1e-93
 Identities = 167/333 (50%), Positives = 228/333 (68%), Gaps = 6/333 (1%)

Query: 5   FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW 64
           + VA+ GATG VG  M+ VL EREFP DE++ +AS RS G    F  KT++  ++E+FD+
Sbjct: 3   YKVAVVGATGNVGREMMNVLAEREFPADEVYAIASRRSLGTEVSFGDKTLKCHDIEQFDF 62

Query: 65  SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNR 124
           S+    L SAG  ++ +W P  A  G +VIDN+S++RYD D+PL+VPEVN +A+A +  +
Sbjct: 63  SKADFCLMSAGSTVAKEWGPRIAATGCIVIDNSSYWRYDQDVPLIVPEVNADAVAGYTKK 122

Query: 125 NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKL-LNGY 183
           NIIANPNCST Q++VALKP++DA  I+R+ V+TYQSVSGAGK  +DEL  QT  + + G 
Sbjct: 123 NIIANPNCSTAQLVVALKPLHDAATIKRVVVSTYQSVSGAGKEAMDELWQQTKGMYVPGA 182

Query: 184 PAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFY 243
             E   F++QIAFNCIP ID FM++GYTKEE KM+ ET+KI  DP I +  TCVRVPVF 
Sbjct: 183 EVEAKKFTKQIAFNCIPHIDVFMEDGYTKEEWKMLAETKKIL-DPKIKLTATCVRVPVFV 241

Query: 244 GHAEAVHVETRAPIDAEQVMDMLEQTDGIELF---RGADFPTQVRDAGGKDHVLVGRVRN 300
           GH+EAV +E   PI AE+   +L +  GI +        + T V +A G+    V R+R 
Sbjct: 242 GHSEAVTIEFENPISAEEARAILREAPGIMVVDKREPGGYVTPV-EAAGEFATYVSRIRE 300

Query: 301 DISHHSGINLWVVADNVRKGAATNAVQIAELLV 333
           D +  +G+ LW+V+DN+ KGAA N VQIAE ++
Sbjct: 301 DATVENGLQLWIVSDNLLKGAALNTVQIAETII 333


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 310
Number of extensions: 18
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 342
Length adjustment: 28
Effective length of query: 309
Effective length of database: 314
Effective search space:    97026
Effective search space used:    97026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_068462935.1 APY04_RS12025 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.10295.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10295.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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