Alignments for a candidate for cimA in Desulfacinum infernum DSM 9756

Align (R)-citramalate synthase (EC 2.3.3.21) (characterized)
to candidate WP_073035955.1 BUB04_RS00625 citramalate synthase

Query= BRENDA::Q74C76
         (528 letters)



>NCBI__GCF_900129305.1:WP_073035955.1
          Length = 532

 Score =  668 bits (1723), Expect = 0.0
 Identities = 323/529 (61%), Positives = 417/529 (78%), Gaps = 1/529 (0%)

Query: 1   MSLVKLYDTTLRDGTQAEDISFLVEDKIRIAHKLDEIGIHYIEGGWPGSNPKDVAFFKDI 60
           M  V +YDTTLRDGTQAED S  + DKIR+A KLD++GI YIEGGWPGSNPKD  FF++I
Sbjct: 1   MRRVSIYDTTLRDGTQAEDFSLSLPDKIRVALKLDDLGIDYIEGGWPGSNPKDQGFFEEI 60

Query: 61  KKEKLSQAKIAAFGSTRRAKVTPDKDHNLKTLIQAEPDVCTIFGKTWDFHVHEALRISLE 120
           +  +L  A+IAAFGST      P+KD NL++L+ A+  V T+FGK+W  HV +AL+ISLE
Sbjct: 61  RNYELKHARIAAFGSTHHPGTRPEKDANLRSLLDAKTRVITLFGKSWTIHVKDALKISLE 120

Query: 121 ENLELIFDSLEYLKANVPEVFYDAEHFFDGYKANPDYAIKTLKAAQDAKADCIVLCDTNG 180
            NLELI DSL YL+ +V  +FYDAEHFFDG++A+P+YA+ TL+ A +  A+C++LCDTNG
Sbjct: 121 RNLELIRDSLAYLRPHVETLFYDAEHFFDGFRADPEYALTTLEKAVEGGAECLILCDTNG 180

Query: 181 GTMPFELVEIIREVRKHITA-PLGIHTHNDSECAVANSLHAVSEGIVQVQGTINGFGERC 239
           G +P  + E +R VR+     PLGIH HNDS+ AVANSL AV  G VQVQGT NG GERC
Sbjct: 181 GNLPSFIEEAMRAVRERFPGVPLGIHAHNDSDLAVANSLKAVEMGAVQVQGTFNGVGERC 240

Query: 240 GNANLCSIIPALKLKMKRECIGDDQLRKLRDLSRFVYELANLSPNKHQAYVGNSAFAHKG 299
           GNANLCSIIP L LKM   C+  D+L+KLR +SRF+ ELAN+ PN++Q YVG SAFAHKG
Sbjct: 241 GNANLCSIIPNLCLKMNVPCLEPDKLKKLRAVSRFILELANMPPNRYQPYVGRSAFAHKG 300

Query: 300 GVHVSAIQRHPETYEHLRPELVGNMTRVLVSDLSGRSNILAKAEEFNIKMDSKDPVTLEI 359
           GVH++A++R+P TYEH+ PELVGN  R L+S++SG++ +  KA+E+ I + S DPV LE+
Sbjct: 301 GVHIAAVERNPATYEHIDPELVGNRRRFLISEVSGKAAVRYKADEYGISLSSTDPVALEV 360

Query: 360 LENIKEMENRGYQFEGAEASFELLMKRALGTHRKFFSVIGFRVIDEKRHEDQKPLSEATI 419
           L+ IKE+E +GYQFE AEASFELL+ RA+G  +++F +IGFRV+D+K  E+++P+SEATI
Sbjct: 361 LKQIKELEYQGYQFEAAEASFELLINRAMGRSKRYFELIGFRVVDQKLSEEEEPVSEATI 420

Query: 420 MVKVGGKIEHTAAEGNGPVNALDNALRKALEKFYPRLKEVKLLDYKVRVLPAGQGTASSI 479
            V+VGG+ EHTAA G+GPVNALDNALRKALEKFYP LK V+L DYKVRVLP  +GTAS +
Sbjct: 421 RVRVGGQEEHTAALGHGPVNALDNALRKALEKFYPELKGVELSDYKVRVLPGKEGTASKV 480

Query: 480 RVLIESGDKESRWGTVGVSENIVDASYQALLDSVEYKLHKSEEIEGSKK 528
           RVLIES D +  WGTVGVS +I++AS+QAL+DS+ YK++ SE+ +G  +
Sbjct: 481 RVLIESYDGKEHWGTVGVSHDILEASWQALVDSINYKMYMSEKEKGESR 529


Lambda     K      H
   0.317    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 863
Number of extensions: 34
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 532
Length adjustment: 35
Effective length of query: 493
Effective length of database: 497
Effective search space:   245021
Effective search space used:   245021
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_073035955.1 BUB04_RS00625 (citramalate synthase)
to HMM TIGR00977 (cimA: citramalate synthase (EC 2.3.1.182))

Software error:

../bin/blast/fastacmd -i /tmp/list.14904.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14904.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.