Alignments for a candidate for glnA in Desulfacinum infernum DSM 9756

Align glutamine synthetase, type I (characterized)
to candidate WP_073037526.1 BUB04_RS04945 type I glutamate--ammonia ligase

Query= metacyc::SYNPCC7942_2156-MONOMER
         (473 letters)



>NCBI__GCF_900129305.1:WP_073037526.1
          Length = 470

 Score =  659 bits (1701), Expect = 0.0
 Identities = 311/469 (66%), Positives = 373/469 (79%), Gaps = 1/469 (0%)

Query: 4   TAQEVLQLIQEKGIQLVDLKFIDMPGIWQHLTLHVSQIDENSFVEGVPFDGSSIRGWKAI 63
           T +EVL   +E G Q+VD +F+D PGIWQH T+ +S+ DE+SF +G  FDGSSIRGW  I
Sbjct: 2   TPKEVLAYAKENGAQMVDFRFLDFPGIWQHFTVPISEFDESSFEDGYGFDGSSIRGWAPI 61

Query: 64  NESDMTMVPDPTTAWIDPFMKEPTLSMICTIYEPRTNTPYERCPRAIAQKAVDYLKASGI 123
           N SDM +VPDPTTA +DPF K PTL++IC I +P T   Y R PR IAQKA +YLK +GI
Sbjct: 62  NASDMLVVPDPTTAVMDPFFKVPTLTVICNIVDPVTKEKYSRDPRHIAQKAEEYLKFTGI 121

Query: 124 GDTAYFGPEAEFFIFDDVRFDQAENKSYYYVDSIEGRWNSGREEEGGNLGYKPRYKEGYF 183
           GDTAY GPEAEFFIFDD+R+D + +  YY+VDS+EG WN+GREE   NLGYKPR+KEGYF
Sbjct: 122 GDTAYIGPEAEFFIFDDIRYDSSAHFGYYFVDSVEGIWNTGREENP-NLGYKPRHKEGYF 180

Query: 184 PVAPTDTSQDMRSEMLLTMADCGVPIEKHHHEVATGGQCELGFRFGKLIEAADWLMTYKY 243
           PV PTD+ QD+R+EM+L M   G+ +E  HHEVAT GQ E+  RF  L++  D LM +KY
Sbjct: 181 PVPPTDSQQDLRTEMVLMMQKVGIAVECQHHEVATAGQAEIDMRFAPLVKMGDQLMWFKY 240

Query: 244 VIKNVGRRYGKTITFMPKPLFNDNGSGMHTHQSIWNDGQPLFAGDQYAGLSQMALWYIGG 303
           +IKNV R +GKT+TFMPKP++ DNGSGMHTH SIW DGQPLFAGD+YAGLS  AL+ +GG
Sbjct: 241 IIKNVARNHGKTVTFMPKPIYGDNGSGMHTHLSIWKDGQPLFAGDKYAGLSDTALYAVGG 300

Query: 304 ILKHAPALLALTNPTTNSYKRLVPGFEAPVNLAYSQGNRSASVRIPLSGTNPKAKRLEFR 363
           ILKHA AL A+TNPTTNSYKRLVPG+EAPVNLAYS  NRSAS+RIP+   +PKAKR+E R
Sbjct: 301 ILKHAAALCAITNPTTNSYKRLVPGYEAPVNLAYSSRNRSASIRIPMYSASPKAKRIEVR 360

Query: 364 CPDATSNPYLAFAAMLCAGIDGIKNQIDPGEPLDVDIYDLSPEELAKIPSTPGSLKDALK 423
            PD + N YLAF+A+L A +DGI+N+IDPGEPLD DIY LSPEELA +PSTPGSL++ALK
Sbjct: 361 FPDPSCNGYLAFSALLMAALDGIENRIDPGEPLDKDIYSLSPEELADVPSTPGSLEEALK 420

Query: 424 ALEADHDFLTVGGVFTEDFIQNWIEYKLDNEVIPISLRPHPYEFALYYD 472
           ALEADH+FL  G VFT+D I+ WIEYK   EV P+ LRPHPYEF LYYD
Sbjct: 421 ALEADHEFLLKGDVFTQDVIETWIEYKRSREVDPVRLRPHPYEFMLYYD 469


Lambda     K      H
   0.319    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 807
Number of extensions: 29
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 470
Length adjustment: 33
Effective length of query: 440
Effective length of database: 437
Effective search space:   192280
Effective search space used:   192280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_073037526.1 BUB04_RS04945 (type I glutamate--ammonia ligase)
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.2190.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2190.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.