Alignments for a candidate for hisA in Desulfacinum infernum DSM 9756

Align 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate WP_073038675.1 BUB04_RS09020 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase

Query= reanno::Smeli:SMc02570
         (247 letters)



>NCBI__GCF_900129305.1:WP_073038675.1
          Length = 255

 Score =  258 bits (659), Expect = 8e-74
 Identities = 136/244 (55%), Positives = 170/244 (69%)

Query: 1   MILFPAIDLKDGQCVRLKLGDMEQATVYNPDPAAQARAFEEQGFEWLHVVDLNGAFAGET 60
           MILFPAIDLK+G+CVRL  G M++ATVY  DP   A  +E  G +WLHVVDL+GAFA   
Sbjct: 1   MILFPAIDLKEGRCVRLMQGHMDKATVYGTDPVQVALRWEAAGAQWLHVVDLDGAFAKTP 60

Query: 61  VNGAAVDAILKATKNPVQLGGGIRTLEHIENWLSRGLKRVILGTVAVRDPALVIEACRKF 120
            N   V  I++A K PVQLGGGIR+ E    +L  G++RVILGT A RDPA+V   C +F
Sbjct: 61  KNRDVVARIVQAVKIPVQLGGGIRSEETAAAYLDLGVRRVILGTAATRDPAIVERVCGRF 120

Query: 121 PGRVAVGIDAKGGKVAVEGWAEASELGVVELARKFEGAGVAAIIYTDIDRDGILTGINWA 180
           PGRVA+GIDA+ G VAVEGW E ++L  V  AR+FEG  +AA+IYTDI RDG+ +G+N  
Sbjct: 121 PGRVALGIDARNGLVAVEGWTETTDLQAVSFARRFEGLPLAALIYTDIHRDGMQSGVNIE 180

Query: 181 STLELADAVSIPVIASGGLASMDDIRRMTEPDAQKLEGAISGRALYDGRIDPKEALDLIR 240
           +T EL  AV+IPVIASGG+A   DI  +       LEG I+GRALY G +D +EAL  +R
Sbjct: 181 ATAELCRAVTIPVIASGGVAGWKDIEALLPLVPLGLEGVITGRALYTGALDLEEALRRLR 240

Query: 241 EARK 244
           E  +
Sbjct: 241 ERER 244


Lambda     K      H
   0.319    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 257
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 255
Length adjustment: 24
Effective length of query: 223
Effective length of database: 231
Effective search space:    51513
Effective search space used:    51513
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate WP_073038675.1 BUB04_RS09020 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.15578.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15578.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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