Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate WP_073039028.1 BUB04_RS09920 3-isopropylmalate dehydrogenase
Query= BRENDA::Q8E9N3 (364 letters) >NCBI__GCF_900129305.1:WP_073039028.1 Length = 362 Score = 482 bits (1240), Expect = e-141 Identities = 244/359 (67%), Positives = 289/359 (80%), Gaps = 2/359 (0%) Query: 4 QIAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGC 63 ++AVLAGDGIGPE+MAEA KVLKA EA FG ++Y DVGG AID HG LP TL C Sbjct: 6 KVAVLAGDGIGPEIMAEAVKVLKAAEAAFGFRLKYEYADVGGCAIDCHGHALPPETLALC 65 Query: 64 EAADAILFGSVGGPKWEKLPPNEQPERGALLPLRGHFELFCNLRPAKLHDGLEHMSPLRS 123 EA+DAILFG+VGGPKWE LPP++QPER ALLPLR HF+LFCNLRP+++ L SPLR Sbjct: 66 EASDAILFGAVGGPKWECLPPDQQPERAALLPLRKHFDLFCNLRPSRVFPALVEASPLRP 125 Query: 124 DISARGFDVLCVRELTGGIYFGKPKGRQGEGESEEAFDTMRYSRREISRIARIAFEAARG 183 DI GFD+LC+RELT GIYFG+PKGR+G+G E AFDTM Y+RREI RIAR AFE AR Sbjct: 126 DIVGDGFDILCIRELTSGIYFGRPKGREGQGADERAFDTMSYTRREIERIARKAFEIARL 185 Query: 184 RRKKVTSVDKANVLACSVLWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPDEFDVMLC 243 RRKKVTS+DKANVL VLWRQVV EV+ D+PDV+L H+YIDNA+MQL+R P +FDV+LC Sbjct: 186 RRKKVTSIDKANVLTTMVLWRQVVTEVSRDYPDVQLNHMYIDNASMQLIRDPHQFDVLLC 245 Query: 244 SNLFGDILSDEIAMLTGSMGLLSSASMNSTGFGLFEPAGGSAPDIAGKGIANPIAQILSA 303 N+FGDILSD+ AM+TGSMGLL+SAS+N + FGL+EPAGGSAPDIAGKGIANPIAQILSA Sbjct: 246 GNMFGDILSDQCAMMTGSMGLLASASINESNFGLYEPAGGSAPDIAGKGIANPIAQILSA 305 Query: 304 ALMLRHSLKQEEAASAIERAVTKALNSGYLTGELLSSDQRHKAKTTVQMGDFIADAVKA 362 A+MLRHS E AA AIERAV + + +G LT + ++ D R KA T QMGD +A ++A Sbjct: 306 AMMLRHSFGLEAAALAIERAVEETIAAGVLTRD-IARDPR-KAVGTAQMGDAVASRIRA 362 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 446 Number of extensions: 16 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 364 Length of database: 362 Length adjustment: 29 Effective length of query: 335 Effective length of database: 333 Effective search space: 111555 Effective search space used: 111555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate WP_073039028.1 BUB04_RS09920 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))
../bin/blast/fastacmd -i /tmp/list.11218.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11218.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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