Alignments for a candidate for asd in Desulfacinum infernum DSM 9756

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_073040945.1 BUB04_RS15000 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_900129305.1:WP_073040945.1
          Length = 339

 Score =  359 bits (922), Expect = e-104
 Identities = 189/336 (56%), Positives = 239/336 (71%), Gaps = 10/336 (2%)

Query: 5   FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW 64
           + VA+ GATGAVG TM+ VL+ER FPV +L LLAS RS GK   F G  V V+ + E  +
Sbjct: 6   YRVAVVGATGAVGTTMVRVLEERNFPVSDLKLLASSRSVGKELTFRGDKVAVEELTEKSF 65

Query: 65  SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNR 124
             V +ALFSAG  +S ++APIAA +G VV+DN+S FR D   PLVVPEVNP A+    ++
Sbjct: 66  EGVDVALFSAGASVSRQFAPIAARSGCVVVDNSSAFRMDPQTPLVVPEVNPHAVRG--HQ 123

Query: 125 NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYP 184
            IIANPNCSTIQM+VALKPI DA GI+RI VTT+Q+VSG G   I+EL  Q   L+ G P
Sbjct: 124 GIIANPNCSTIQMVVALKPIQDAAGIKRIVVTTFQAVSGTGMKAIEELRLQVEALVRGEP 183

Query: 185 AETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYG 244
                +  QIAFNC+P I  F+D+GYT+EEMKMV ET+KIF DP I V  T VRVPV+YG
Sbjct: 184 LPRQVYPHQIAFNCLPHIGSFLDSGYTEEEMKMVNETRKIFEDPDIQVCATTVRVPVYYG 243

Query: 245 HAEAVHVETRAPIDAEQVMDMLEQTDGIELFRGADFPTQVR-----DAGGKDHVLVGRVR 299
           H+E+V VETR P+D ++ + +L++ DG+++    D P   R     DA G+D   VGR+R
Sbjct: 244 HSESVAVETRKPLDVKEAVALLKRADGVQV---VDEPLAARYPMPLDAAGRDETFVGRIR 300

Query: 300 NDISHHSGINLWVVADNVRKGAATNAVQIAELLVRD 335
            DIS  +G+ LW+VADN+RKGAATNAVQIAELLVR+
Sbjct: 301 KDISVENGLVLWIVADNIRKGAATNAVQIAELLVRE 336


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 327
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 339
Length adjustment: 28
Effective length of query: 309
Effective length of database: 311
Effective search space:    96099
Effective search space used:    96099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_073040945.1 BUB04_RS15000 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.10523.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10523.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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