Alignments for a candidate for ilvI in Rhizobium etli CFN 42

Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate WP_073990385.1 RHE_RS14270 acetolactate synthase 3 large subunit

Query= metacyc::MONOMER-18810
         (585 letters)



>NCBI__GCF_000092045.1:WP_073990385.1
          Length = 596

 Score =  631 bits (1628), Expect = 0.0
 Identities = 318/576 (55%), Positives = 417/576 (72%), Gaps = 6/576 (1%)

Query: 12  NSSAAPEMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQAAVH 71
           N +A   M GAEI++ AL + GVE+++GYPGGAVL IYDE+ +Q + +HILVRHEQ A H
Sbjct: 5   NQAAGNRMTGAEIVLKALKDNGVEHIFGYPGGAVLPIYDEIFQQDEVKHILVRHEQGAGH 64

Query: 72  AADGYARATGKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAFQEC 131
           AA+GYAR+TGKVGV LVTSGPG TNAVT +  A +DSIP+V +TG VPT  IG DAFQEC
Sbjct: 65  AAEGYARSTGKVGVMLVTSGPGATNAVTPLQDALMDSIPLVCLTGQVPTSLIGSDAFQEC 124

Query: 132 DTVGITRPIVKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDVSRNACKYEYPK 191
           DTVGITRP  KHN+LVKDV +LAA I +AF IA +GRPGPVVVDIPKDV      Y  P 
Sbjct: 125 DTVGITRPCTKHNWLVKDVNELAAVIHEAFRIAQSGRPGPVVVDIPKDVQFATGTYTPPA 184

Query: 192 SIDM-RSYNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLA--NASDELRQLAALTGH 248
              + +SY P  +G   QI  A+ L+  A RP IY+GGGVV +   AS  LR+L  LT  
Sbjct: 185 DYPIQKSYQPKIQGDLNQIHAAIELMANARRPIIYSGGGVVNSGPEASKLLRELVELTDF 244

Query: 249 PVTNTLMGLGAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHFT 308
           P+T+TLMGLGA+P + K ++ MLGMHG+YEANMAM +CDV++ IGARFDDR+ G    F+
Sbjct: 245 PITSTLMGLGAYPASGKNWLKMLGMHGSYEANMAMHDCDVMVCIGARFDDRITGRLNAFS 304

Query: 309 SQARKIIHIDIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREALAKWWEQI 368
             ++K IHIDIDPSSI+K V+VDI I G+V  VL++++   +A   KP++  LA WW  I
Sbjct: 305 PNSKK-IHIDIDPSSINKNVRVDIGIRGDVGHVLEDMVRLWRALPKKPEKNRLADWWSDI 363

Query: 369 EQWRSVDCLKYDRSSEIIKPQYVVEKIWELTKG-DAFICSDVGQHQMWAAQFYKFDEPRR 427
            +WR+ +   Y +++++I PQY +E+++  TK  D +I ++VGQHQMWAAQF+ F++P R
Sbjct: 364 ARWRARNSFAYTKNNDVIMPQYALERLYAHTKDRDTYITTEVGQHQMWAAQFFGFEQPNR 423

Query: 428 WINSGGLGTMGVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKICSL 487
           W+ SGGLGTMG GLP A+G++ A P   V+ I G+ SIQMCIQE+ST +QYD P+KI  +
Sbjct: 424 WMTSGGLGTMGYGLPAALGVQIAHPGSLVIDIAGDASIQMCIQEMSTAIQYDAPIKIFIM 483

Query: 488 NNGYLGMVRQWQEIEYDNRYSHSYMDALPDFVKLAEAYGHVGMRVEKTSDVEPALREAFR 547
           NN Y+GMVRQWQ++ + NR SHSY +A+PDFVKLAEAYG VG+R EK  +++ A+ E   
Sbjct: 484 NNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGLRCEKPDELDDAIIEMIE 543

Query: 548 LKDRTVFLDFQTDPTENVWPMVQAGKGISEMLLGAE 583
           +K   +F D +     N +PM+ +GK  +EMLL  E
Sbjct: 544 VKKPVIF-DCRVANLANCFPMIPSGKAHNEMLLPDE 578


Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 965
Number of extensions: 42
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 596
Length adjustment: 37
Effective length of query: 548
Effective length of database: 559
Effective search space:   306332
Effective search space used:   306332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate WP_073990385.1 RHE_RS14270 (acetolactate synthase 3 large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.30090.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30090.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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