Alignments for a candidate for cysK in Alkalihalobacterium alkalinitrilicum DSM 22532

Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate WP_075385937.1 BK574_RS21905 cysteine synthase A

Query= BRENDA::P37887
         (308 letters)



>NCBI__GCF_002019605.1:WP_075385937.1
          Length = 312

 Score =  348 bits (893), Expect = e-101
 Identities = 187/310 (60%), Positives = 224/310 (72%), Gaps = 3/310 (0%)

Query: 2   VRVANSITELIGNTPIVKLNRLADENSADVYLKLEYMNPGSSVKDRIGLAMIEAAEKEGK 61
           +RV N+I ELIG+TP+VKLN++AD+N A VYLKLE+ NP  SVKDR    MI  AEK+G 
Sbjct: 1   MRVVNNIAELIGHTPLVKLNKIADKNGASVYLKLEFFNPSGSVKDRAAYQMIIQAEKDGL 60

Query: 62  LKAGNTIIEPTSGNTGIGLAMVAAAKGLKAILVMPDTMSMERRNLLRAYGAELVLTPGAE 121
           LK G TIIEPTSGNTGIGLAM AAA+G KAIL MPDTMS ER N+L+AYGAE+VLT G +
Sbjct: 61  LKPGATIIEPTSGNTGIGLAMNAAARGYKAILTMPDTMSEERINILKAYGAEVVLTEGDK 120

Query: 122 GMKGAIKKAEELAEK-HGYFVPQQFNNPSNPEIHRQTTGKEIVEQFGD--DQLDAFVAGI 178
            M GAI KA ELA+     FVP QF NP+NP+ HR TT  EI E       +L AFVA  
Sbjct: 121 KMPGAIDKAHELAKDIPNSFVPMQFENPANPDAHRYTTAVEIKEALDSIGKKLSAFVAAS 180

Query: 179 GTGGTITGAGEVLKEAYPSIKIYAVEPSDSPVLSGGKPGPHKIQGIGAGFVPDILNTEVY 238
           GTGGTITG GE LK+ YP   ++ VEP+ SPVLSGGKPGPHK+ G   GF+P ILN  VY
Sbjct: 181 GTGGTITGTGEELKKFYPKATVHVVEPAGSPVLSGGKPGPHKLVGTSPGFIPPILNENVY 240

Query: 239 DEIFPVKNEEAFEYARRAAREEGILGGISSGAAIYAALQVAKKLGKGKKVLAIIPSNGER 298
           +EI  +++E+A+  +   AR+EGIL G SSGAA +AAL+VAK L     V+AI    GER
Sbjct: 241 NEIKKIEDEDAYWASIELARKEGILVGPSSGAACFAALEVAKTLSPDDVVVAIACDTGER 300

Query: 299 YLSTPLYQFD 308
           YLST L+ F+
Sbjct: 301 YLSTDLFDFE 310


Lambda     K      H
   0.313    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 294
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 312
Length adjustment: 27
Effective length of query: 281
Effective length of database: 285
Effective search space:    80085
Effective search space used:    80085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_075385937.1 BK574_RS21905 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.5627.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5627.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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