Alignments for a candidate for argG in Alkalihalobacterium alkalinitrilicum DSM 22532

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_075385996.1 BK574_RS22250 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_002019605.1:WP_075385996.1
          Length = 406

 Score =  376 bits (965), Expect = e-109
 Identities = 184/395 (46%), Positives = 270/395 (68%), Gaps = 2/395 (0%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDL 61
           K+VLAYSGGLDTS+ +KWL +    +V+A   D+G+G +++  +EKAL  GA ++  +D 
Sbjct: 5   KVVLAYSGGLDTSVAIKWLSDQ-GYDVVAVGLDVGEGRDLDFIKEKALTVGAIQSYTIDA 63

Query: 62  KEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGND 121
           K+EF  +FV P ++A  +YE  Y L ++++RPLI+K LV IAE+ GA+A+AHG TGKGND
Sbjct: 64  KKEFAEEFVLPALQAHTLYEQKYPLVSALSRPLISKKLVEIAEQVGADAVAHGCTGKGND 123

Query: 122 QVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLHI 181
           QVRFE++  AL PD++V+AP REW +  R E I YA+ + IP+P+  + PYS+DANL   
Sbjct: 124 QVRFEVSIQALNPDLEVLAPVREWGWS-RDEEIEYAKNNNIPIPIDLDNPYSVDANLWGR 182

Query: 182 SYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQR 241
           + E GVLEDPWA PP+G + MT   E+ PD PEY+E+ F +G PV+++G +     L+ +
Sbjct: 183 ANECGVLEDPWATPPEGAYEMTAPLEKTPDVPEYLEIAFEQGVPVSLDGTKYELHELILK 242

Query: 242 LNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDML 301
           LNE+ G+HGVGR+D VENR VG+KSR VYE PG   L  A + +E LTL ++V H + ++
Sbjct: 243 LNEVAGKHGVGRIDHVENRLVGIKSREVYECPGAMTLIKAHKELEDLTLTKDVAHFKPVI 302

Query: 302 SPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQD 361
           S K AE++Y G W++    ALQA+     ++VTG+ R+KL+KG+  + GRK+  SLY + 
Sbjct: 303 SQKLAEVIYNGLWFSSLTPALQAFLQETQKNVTGLVRVKLFKGHAIIEGRKSEYSLYDEK 362

Query: 362 LVSFDEAGGYDQKDAEGFIKIQALRLRVRALVERE 396
           L ++     +D   A GFIK+  L  +V + V ++
Sbjct: 363 LATYSTDDEFDHNAAVGFIKLWGLPTKVSSKVNKD 397


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 428
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 406
Length adjustment: 31
Effective length of query: 369
Effective length of database: 375
Effective search space:   138375
Effective search space used:   138375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_075385996.1 BK574_RS22250 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.11971.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11971.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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