Alignments for a candidate for cysK in Alkalihalobacterium alkalinitrilicum DSM 22532

Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate WP_075388449.1 BK574_RS17800 cysteine synthase A

Query= BRENDA::P37887
         (308 letters)



>NCBI__GCF_002019605.1:WP_075388449.1
          Length = 307

 Score =  484 bits (1247), Expect = e-142
 Identities = 240/307 (78%), Positives = 277/307 (90%), Gaps = 1/307 (0%)

Query: 2   VRVANSITELIGNTPIVKLNRLADENSADVYLKLEYMNPGSSVKDRIGLAMIEAAEKEGK 61
           +RVANSIT+LIG TP+VKLNR+  E +AD+YLKLEY NPGSSVKDRI LAMIEAAEK+G+
Sbjct: 1   MRVANSITDLIGQTPLVKLNRIVPEGAADIYLKLEYFNPGSSVKDRIALAMIEAAEKDGR 60

Query: 62  LKAGNTIIEPTSGNTGIGLAMVAAAKGLKAILVMPDTMSMERRNLLRAYGAELVLTPGAE 121
           LK  +TI+EPTSGNTGIGLAMVA+AKG K  LVMP+TMS+ERRNLLRAYGAELVLTPG E
Sbjct: 61  LKPEDTIVEPTSGNTGIGLAMVASAKGYKTKLVMPETMSIERRNLLRAYGAELVLTPGPE 120

Query: 122 GMKGAIKKAEELAEKHGYFVPQQFNNPSNPEIHRQTTGKEIVEQFGDDQLDAFVAGIGTG 181
           GM GAI+KA EL+++ GYF+PQQF N +NPEIHR+TTGKE++EQ  D  +DAF++GIGTG
Sbjct: 121 GMGGAIRKATELSKEDGYFMPQQFENEANPEIHRETTGKELLEQV-DGSVDAFISGIGTG 179

Query: 182 GTITGAGEVLKEAYPSIKIYAVEPSDSPVLSGGKPGPHKIQGIGAGFVPDILNTEVYDEI 241
           GTITGAG +LKE +P +KIYAVEP+DSPVLSGGKPGPHKIQGIGAGFVP IL+T+VYDE+
Sbjct: 180 GTITGAGGLLKENFPELKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPSILDTKVYDEV 239

Query: 242 FPVKNEEAFEYARRAAREEGILGGISSGAAIYAALQVAKKLGKGKKVLAIIPSNGERYLS 301
             V N++AFEYARRA REEGILGGISSGAAIYAA+QVA+KLG GKKV+AIIPSNGERYLS
Sbjct: 240 IKVTNDQAFEYARRAGREEGILGGISSGAAIYAAIQVAEKLGAGKKVVAIIPSNGERYLS 299

Query: 302 TPLYQFD 308
           TPLYQFD
Sbjct: 300 TPLYQFD 306


Lambda     K      H
   0.313    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 334
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 307
Length adjustment: 27
Effective length of query: 281
Effective length of database: 280
Effective search space:    78680
Effective search space used:    78680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_075388449.1 BK574_RS17800 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.7153.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7153.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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