Alignments for a candidate for argC in Carboxydothermus pertinax Ug1

Align N-acetyl-gamma-glutamyl-phosphate reductase; Short=AGPR; EC 1.2.1.38 (characterized, see rationale)
to candidate WP_075860262.1 cpu_RS12190 N-acetyl-gamma-glutamyl-phosphate reductase

Query= uniprot:E4PLW0
         (388 letters)



>NCBI__GCF_001950255.1:WP_075860262.1
          Length = 338

 Score =  276 bits (705), Expect = 8e-79
 Identities = 161/341 (47%), Positives = 214/341 (62%), Gaps = 12/341 (3%)

Query: 45  IKVGIVGGTGYTGVELLRILAVHPEVSVSCITSRSEAGMPVAEMYPNLRGHYDLAFSEPD 104
           +KV +VG TGYTG EL+R+L++HP+VS   + SR +  +   + +  L    D A     
Sbjct: 1   MKVAVVGATGYTGAELVRLLSMHPKVSGLFLFSRGDGEIDFRQNFLGL----DFAGKIKP 56

Query: 105 VNVLGA--CDLVFFATPHGVAMRMVPELMSAGVRVVDLSADFRLKDLDVWANWYGMAHES 162
           ++ L     D  F A PHG + R   EL+  GV+V+DLSADFRL  L V+  WYG  H +
Sbjct: 57  LDELAKEEFDFSFLALPHGESGRYAGELVRRGVKVIDLSADFRLP-LAVYEKWYG-PHPA 114

Query: 163 PEWAEKAVYGLPEVVRDEIRNAQLVANPGCYPTAVQLGFLPLLEQGLVDPKRLIADAKSG 222
           PE  E AVYGL E   ++I+ A+L+ANPGCYPTA  L  LPL E+ L+    +I+D KSG
Sbjct: 115 PELVEIAVYGLSEYFSEKIKTARLIANPGCYPTAFLLAVLPLAEKDLLQGV-IISDMKSG 173

Query: 223 ASGAGRQGKIGMLHGEIGESFKAYGASG-HRHLPEIRQGLCGAAGGDVGVTFVPHLIPMI 281
            +GAGR  K  ML GE+ E+F+ YG  G HRHLPE+   L   A G + V F PHLIPM 
Sbjct: 174 VTGAGRSAKREMLFGEVAENFRPYGVGGVHRHLPEMENILNNYAQG-LRVIFTPHLIPMK 232

Query: 282 RGIEATLYAELKNPADFDRLQALFEQRFDDEPFVDVMPFGSHPETRSVRGANQCRMALHR 341
           RGI  T+Y +LK     + L+ ++  +F D PF+ ++P G  PETR+V G N   +AL++
Sbjct: 233 RGILGTIYLDLKQNLSTEELRKIYLNKFHDNPFIKILPEGYLPETRAVAGTNNVLIALNK 292

Query: 342 QEQSNIVIVSSVIDNLVKGAAGQAVQNMNIMFGLKETMGLE 382
            E    VI++  IDNL KGAAGQAVQNMN+M GL ET GL+
Sbjct: 293 -EPGGKVIITVAIDNLGKGAAGQAVQNMNLMAGLDETCGLK 332


Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 351
Number of extensions: 17
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 338
Length adjustment: 29
Effective length of query: 359
Effective length of database: 309
Effective search space:   110931
Effective search space used:   110931
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_075860262.1 cpu_RS12190 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.7689.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7689.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.