Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_077243672.1 B1A74_RS02465 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
Query= SwissProt::P0A6F1
(382 letters)
>NCBI__GCF_001995255.1:WP_077243672.1
Length = 377
Score = 521 bits (1343), Expect = e-153
Identities = 250/374 (66%), Positives = 299/374 (79%), Gaps = 2/374 (0%)
Query: 5 ALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVG 64
ALLVLEDGT FHG+AIGA G VGEVVFNT+MTGYQEILTDPSY+RQ+VTLTYPHIGN G
Sbjct: 5 ALLVLEDGTVFHGQAIGALGQTVGEVVFNTAMTGYQEILTDPSYARQMVTLTYPHIGNTG 64
Query: 65 TNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLRE 124
TN D+ESS+ A GL++RD+P + SNFR+ E L YL RH IVAI+ IDTR+LTRLLRE
Sbjct: 65 TNPEDDESSRAQAAGLIVRDVPPLVSNFRSRESLPDYLLRHGIVAISGIDTRRLTRLLRE 124
Query: 125 KGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEA 184
KGAQNGCI AG+ ++A AL AR FPG+ GMDLA+EVTT + Y W +G+W L GG P
Sbjct: 125 KGAQNGCIQAGEVDESA-ALAAAREFPGIKGMDLAREVTTRKRYEWLEGTWQL-GGEPRQ 182
Query: 185 KKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGD 244
D +HVVAYDFG K+NILRM+VDRGCR+T+VPA+TS E+V++++PDG+FLSNGPGD
Sbjct: 183 LSPDAAEYHVVAYDFGMKQNILRMMVDRGCRVTVVPAETSVEEVMELSPDGVFLSNGPGD 242
Query: 245 PAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNV 304
P PC YAI AI+ F E +P+FGICLGHQLL LASGA++VKMKFGHHG NHP++
Sbjct: 243 PEPCTYAIEAIRGFCERRVPLFGICLGHQLLGLASGAQSVKMKFGHHGANHPIRHEASGR 302
Query: 305 VMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAA 364
VMI++QNHGFA+DE LP L TH+SLFDGTLQG+ RTD PAFS QGHPEASPGPHD +
Sbjct: 303 VMISSQNHGFAIDEDRLPGTLTPTHRSLFDGTLQGVARTDCPAFSLQGHPEASPGPHDVS 362
Query: 365 PLFDHFIELIEQYR 378
FD F+E++ R
Sbjct: 363 AAFDDFVEMMRAVR 376
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 512
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 377
Length adjustment: 30
Effective length of query: 352
Effective length of database: 347
Effective search space: 122144
Effective search space used: 122144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)
Align candidate WP_077243672.1 B1A74_RS02465 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.30787.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30787.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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