Alignments for a candidate for hisH in Thioalkalivibrio halophilus HL17

Align IGP synthase, amidotransferase subunit (EC 4.3.2.10) (characterized)
to candidate WP_077244046.1 B1A74_RS05750 imidazole glycerol phosphate synthase subunit HisH

Query= reanno::HerbieS:HSERO_RS20325
         (212 letters)



>NCBI__GCF_001995255.1:WP_077244046.1
          Length = 221

 Score =  184 bits (468), Expect = 8e-52
 Identities = 94/212 (44%), Positives = 129/212 (60%), Gaps = 4/212 (1%)

Query: 1   MNKIVVVDYGMGNLRSVAQALRH-VAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRS 59
           M  + V+DYGMGNL SV +AL H  AP   +  + +   +R ADR+V PGQGA  D M++
Sbjct: 1   METVAVIDYGMGNLHSVERALTHEAAPGQRILRTDDPEILREADRLVFPGQGAAGDAMQA 60

Query: 60  LRESGVQDAVIEASRTKPLFGVCVGEQMLFDWSEE-GDTPGLGLLPGKVVRFDLEGMRQD 118
           L   G+   + E + ++P  G+C+G+Q+L + S+E G    LG++PG V RF      Q 
Sbjct: 61  LARRGLNRLLPELAGSRPFLGLCLGQQILMEHSDESGGVDLLGVIPGGVARFPERSDAQ- 119

Query: 119 DGSLFKVPQMGWNHVHQTSRHPLWEGIADNAFFYFVHSYYAVPAESAHVVGQTPYGRDFA 178
            G   KVP MGWN V  T  HPLW G+ +  +FYFVHS+   P ++A V   T YG  FA
Sbjct: 120 -GRRLKVPHMGWNRVQPTGEHPLWHGLPETPWFYFVHSFRVQPRDAASVAAHTDYGETFA 178

Query: 179 CAVARDNIFATQFHPEKSASAGLQLYRNFVHW 210
            A+AR ++F  Q HPEKSA+ GL+L  NF+ W
Sbjct: 179 SALARGSLFTMQCHPEKSAACGLRLLNNFLRW 210


Lambda     K      H
   0.322    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 176
Number of extensions: 8
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 221
Length adjustment: 22
Effective length of query: 190
Effective length of database: 199
Effective search space:    37810
Effective search space used:    37810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_077244046.1 B1A74_RS05750 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.21907.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21907.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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