Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_077277799.1 B1C78_RS03695 aspartate-semialdehyde dehydrogenase
Query= SwissProt::P23247 (337 letters) >NCBI__GCF_002000365.1:WP_077277799.1 Length = 340 Score = 426 bits (1094), Expect = e-124 Identities = 211/339 (62%), Positives = 259/339 (76%), Gaps = 3/339 (0%) Query: 1 MSQQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVE 60 MS++F+VA+ GATGAVGETML +L ER+ P+ E++ +AS RS G +F + + VQ++ Sbjct: 1 MSKKFDVAVVGATGAVGETMLSILAERDLPLGEVYAVASARSAGSRVKFGDRHLVVQDLA 60 Query: 61 EFDWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAE 120 EFD+S+V I LFS G +S ++AP AA AG VVIDNTS FRYD DIPLVVPEVNP A+A Sbjct: 61 EFDFSKVQIGLFSPGASVSKEYAPKAAAAGCVVIDNTSQFRYDDDIPLVVPEVNPHAVAG 120 Query: 121 FRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLL 180 + NR IIANPNCSTIQMLVALKPI DAVGI RINV TYQ+VSG GK ++ELA QTA LL Sbjct: 121 YTNRGIIANPNCSTIQMLVALKPIQDAVGIARINVATYQAVSGTGKEAVEELAAQTANLL 180 Query: 181 NGYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVP 240 NG P E + + +QIAFN +P ID F+DNGYTKEEMKMVWET+KI D SI VNPT VR+P Sbjct: 181 NGKPIEKHVYPKQIAFNALPHIDVFLDNGYTKEEMKMVWETRKIMGDDSIQVNPTAVRIP 240 Query: 241 VFYGHAEAVHVETRAPIDAEQVMDMLEQTDGIELF---RGADFPTQVRDAGGKDHVLVGR 297 VFYGH+EAVHVETR I AEQ ++L + G+ + + +PT V + D V VGR Sbjct: 241 VFYGHSEAVHVETREKITAEQARELLSKAPGVVVLDERKDGGYPTAVTEGANHDPVYVGR 300 Query: 298 VRNDISHHSGINLWVVADNVRKGAATNAVQIAELLVRDY 336 +R DISH G+NLWVVADNVRKGAA N++QIAE+L++DY Sbjct: 301 IREDISHPQGLNLWVVADNVRKGAALNSIQIAEILIKDY 339 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 343 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 340 Length adjustment: 28 Effective length of query: 309 Effective length of database: 312 Effective search space: 96408 Effective search space used: 96408 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate WP_077277799.1 B1C78_RS03695 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.19838.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19838.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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