Alignments for a candidate for dapE in Thioalkalivibrio denitrificans ALJD

Align succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) (characterized)
to candidate WP_077277883.1 B1C78_RS04150 succinyl-diaminopimelate desuccinylase

Query= BRENDA::Q9KQ52
         (377 letters)



>NCBI__GCF_002000365.1:WP_077277883.1
          Length = 376

 Score =  489 bits (1259), Expect = e-143
 Identities = 240/370 (64%), Positives = 280/370 (75%)

Query: 7   LALAKELISRQSVTPADAGCQDLMIERLKALGFEIESMVFEDTTNFWARRGTQSPLFVFA 66
           L LA ELI R+SVTP DAGCQ L+ ERL  LGFE   + F +  N W RRG+  P+  FA
Sbjct: 5   LDLAMELIRRRSVTPEDAGCQKLIAERLAPLGFEAHRLRFGEVDNLWLRRGSAGPVLAFA 64

Query: 67  GHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAADMKGSLACMIVAVERFIAEHPDHQGS 126
           GHTDVVP GPL+QW + PF P V DG L+GRGAADMK S+A  + A E FI +HPDH GS
Sbjct: 65  GHTDVVPPGPLTQWTSDPFTPEVRDGMLYGRGAADMKSSIAAFVTACEAFIRDHPDHAGS 124

Query: 127 IGFLITSDEEGPFINGTVRVVETLMARNELIDMCIVGEPSSTLAVGDVVKNGRRGSITGD 186
           I  LITSDEEGP ++GTV+VVE L  R E ID C+VGEPSST  +GDV+KNGRRGS+TG 
Sbjct: 125 IALLITSDEEGPSVDGTVKVVEWLEQRGERIDWCLVGEPSSTERIGDVIKNGRRGSLTGR 184

Query: 187 LKVKGTQGHVAYPHLANNPVHKALPALAELAATQWDEGNAYFPPTSFQIPNLQAGTGASN 246
           L+V+G QGHVAYPHLA+NPVH+ALPALAELAA +WD GN +FPPTSFQI N+QAGTGA N
Sbjct: 185 LRVRGRQGHVAYPHLADNPVHRALPALAELAAVEWDRGNEHFPPTSFQIANIQAGTGAEN 244

Query: 247 VIPGEFDVQFNFRFSTELTDEEIKRRVHSVLDAHGLDYDVKWTLSGQPFLTDTGELLAAV 306
           VIPGE DV FN RFSTE TDE I+ RVH +LD HGLDY + W LSG PFLT  GEL+AA 
Sbjct: 245 VIPGELDVMFNLRFSTEQTDEGIRARVHGILDHHGLDYTLDWRLSGHPFLTAEGELVAAS 304

Query: 307 VAAVEEVNHQAPALLTTGGTSDGRFIAQMGAQVVELGPVNATIHKVNECVRIADLEKLTD 366
            AA+ E+      L T GGTSDGRFIA  GAQVVELGPVNA+IH+++E VR+ DL+ L+ 
Sbjct: 305 RAAIREITETDSTLSTAGGTSDGRFIAPTGAQVVELGPVNASIHQIDEHVRVDDLDTLSR 364

Query: 367 MYQKTLNHLL 376
           +Y   L  LL
Sbjct: 365 IYAAILTRLL 374


Lambda     K      H
   0.318    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 493
Number of extensions: 15
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 376
Length adjustment: 30
Effective length of query: 347
Effective length of database: 346
Effective search space:   120062
Effective search space used:   120062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_077277883.1 B1C78_RS04150 (succinyl-diaminopimelate desuccinylase)
to HMM TIGR01246 (dapE: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.22473.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22473.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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