Alignments for a candidate for hisG in Thioalkalivibrio denitrificans ALJD

Align ATP phosphoribosyltransferase (EC 2.4.2.17) (characterized)
to candidate WP_077278005.1 B1C78_RS04765 ATP phosphoribosyltransferase

Query= reanno::pseudo5_N2C3_1:AO356_06970
         (211 letters)



>NCBI__GCF_002000365.1:WP_077278005.1
          Length = 216

 Score =  287 bits (735), Expect = 9e-83
 Identities = 142/204 (69%), Positives = 174/204 (85%)

Query: 2   LTIALSKGRILDDTLPLLAEAGIVPTENPDKSRKLIIPTTQADVRLLIVRATDVPTYVEH 61
           LTIALSKGRI  DTLPLLA AGI P ++PD SRKLI+ T   DV+L+++RA DVPTYV++
Sbjct: 6   LTIALSKGRIYKDTLPLLAAAGITPVDDPDTSRKLILDTNHPDVKLVVIRAADVPTYVQY 65

Query: 62  GAADLGVAGKDVLMEYGGQGLYEPLDLRIARCKLMTAGKVGAPEPKGRLRVATKFVNIAK 121
           GAADLGV+GKDVLME+GG+G+YEPLDL IARC+LM AG+ GA +  GRLRVATKFVN  +
Sbjct: 66  GAADLGVSGKDVLMEHGGEGIYEPLDLGIARCRLMVAGRPGATDRAGRLRVATKFVNTTR 125

Query: 122 RYYAEQGRQVDIIKLYGSMELAPLIGLADKIIDVVDTGNTLRANGLEPQDFIADITSRLI 181
           R+YA QGRQV++IKLYGSMELAP++GL+D I+D+VDTGNTLRANGL P + IADI++RL+
Sbjct: 126 RHYAAQGRQVEVIKLYGSMELAPIVGLSDCIVDLVDTGNTLRANGLVPLEHIADISARLV 185

Query: 182 VNKASMKMQHARIQALIDTLRKAV 205
           VNKASMKM+ AR++ LI  L  AV
Sbjct: 186 VNKASMKMKSARVKDLIRRLTDAV 209


Lambda     K      H
   0.320    0.138    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 229
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 216
Length adjustment: 22
Effective length of query: 189
Effective length of database: 194
Effective search space:    36666
Effective search space used:    36666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)

Align candidate WP_077278005.1 B1C78_RS04765 (ATP phosphoribosyltransferase)
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.15328.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15328.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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