Alignments for a candidate for serC in Thioalkalivibrio denitrificans ALJD

Align phosphoserine transaminase (EC 2.6.1.52) (characterized)
to candidate WP_077278460.1 B1C78_RS07075 3-phosphoserine/phosphohydroxythreonine transaminase

Query= BRENDA::P23721
         (362 letters)



>NCBI__GCF_002000365.1:WP_077278460.1
          Length = 360

 Score =  426 bits (1095), Expect = e-124
 Identities = 216/362 (59%), Positives = 263/362 (72%), Gaps = 2/362 (0%)

Query: 1   MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDL 60
           M ++FNFS+GPAMLP  VL++A++E+ DWNG G SVME+SHRGK F+ +AEEAE+D R L
Sbjct: 1   MTRVFNFSAGPAMLPEPVLERAREEMLDWNGTGMSVMEMSHRGKAFMSIAEEAERDLRAL 60

Query: 61  LNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFD 120
           L++P NY+VLF  GG   QFA VP+N+L  KT ADY++ G W+  AI E +++   NV  
Sbjct: 61  LSIPDNYRVLFLQGGASAQFAMVPMNLLRGKTRADYINTGAWSKKAIAEGRRFADVNVA- 119

Query: 121 AKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTIL 180
           A    DG  ++     WQLS +AAY+HY PNETI G+     P  G D  + AD SSTIL
Sbjct: 120 ATGEADGFNSIPVFDTWQLSGDAAYVHYTPNETIGGVEFHWIPRTG-DTPLVADMSSTIL 178

Query: 181 SRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNT 240
           SRP+DVSRYGVIYAGAQKNIGPAGLTIVIVREDL+G A    P++ DY    +NGSM+NT
Sbjct: 179 SRPVDVSRYGVIYAGAQKNIGPAGLTIVIVREDLIGDATEGTPTMFDYRTHAENGSMYNT 238

Query: 241 PPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKANRSRMNV 300
           PPT+ WYL+GLVFKWL   GG+A M +IN++KAE LY  ID SDFY N VA  +RS MNV
Sbjct: 239 PPTYGWYLAGLVFKWLLDLGGLAAMAEINRRKAEKLYAAIDASDFYTNPVAIESRSWMNV 298

Query: 301 PFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 360
           PF LA   LD  FL+E+ + GL  LKGHR VGGMRASIYNAMP  GV AL DFM +FE+R
Sbjct: 299 PFTLAKPELDGEFLKEAESMGLTNLKGHRSVGGMRASIYNAMPEAGVSALVDFMTDFEQR 358

Query: 361 HG 362
            G
Sbjct: 359 KG 360


Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 417
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 360
Length adjustment: 29
Effective length of query: 333
Effective length of database: 331
Effective search space:   110223
Effective search space used:   110223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_077278460.1 B1C78_RS07075 (3-phosphoserine/phosphohydroxythreonine transaminase)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.11779.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11779.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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