Alignments for a candidate for leuA in Thioalkalivibrio denitrificans ALJD

Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate WP_077278977.1 B1C78_RS09770 2-isopropylmalate synthase

Query= BRENDA::Q9JZG1
         (517 letters)



>NCBI__GCF_002000365.1:WP_077278977.1
          Length = 516

 Score =  665 bits (1717), Expect = 0.0
 Identities = 330/502 (65%), Positives = 409/502 (81%)

Query: 1   MTQTNRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAV 60
           M+ ++++ IFDTTLRDGEQSPGA+MT+EEK+R+A+ LEK+ VDIIEAGF  ASPGDFE+V
Sbjct: 1   MSGSDKLYIFDTTLRDGEQSPGASMTREEKVRIAKALEKMRVDIIEAGFPIASPGDFESV 60

Query: 61  NAIAKTITKSTVCSLSRAIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQV 120
            A+A+ +  STVC L+RA + DI +AGEA+  A   RIHTFIATSPIHM++KL+M P QV
Sbjct: 61  QAVARAVKDSTVCGLARAKDTDIDRAGEALKGANSARIHTFIATSPIHMQHKLRMSPDQV 120

Query: 121 IEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPY 180
           +E AVKAVK AR++TD+VEFS EDA RSE+DFL  +  AVI+AGATTINIPDTVGY+IP 
Sbjct: 121 LEQAVKAVKRARQHTDNVEFSPEDAGRSELDFLCRVIEAVIDAGATTINIPDTVGYNIPV 180

Query: 181 KTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGN 240
           +  E  R L  + PN  K V+S HCHNDLGLAVANSL+A+  GARQVECT+NGLGERAGN
Sbjct: 181 QFGELIRNLRERIPNADKAVFSVHCHNDLGLAVANSLSAVLNGARQVECTINGLGERAGN 240

Query: 241 ASVEEIVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESG 300
           AS+EEIVMA++ R D+F  +T +DTTQIVP S+LVS ITG+PVQPNKAIVGANAF+HESG
Sbjct: 241 ASLEEIVMAVRTRQDVFSCDTTLDTTQIVPCSRLVSGITGFPVQPNKAIVGANAFAHESG 300

Query: 301 IHQDGVLKHRETYEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAF 360
           IHQDGVLKHR+TYEIM A+ VGW+ NR+ LGK SGRNAF+T+L +L IE ESEE LN AF
Sbjct: 301 IHQDGVLKHRDTYEIMRAQDVGWSANRIVLGKHSGRNAFRTRLKELAIEFESEEELNEAF 360

Query: 361 ARFKELADKKREIFDEDLHALVSDEMGSMNAESYKFISQKISTETGEEPRADIVFSIKGE 420
           ARFK+LAD+K EI+DEDL ALV++   +M  E +K +S ++ +ETGE P A +  S+ GE
Sbjct: 361 ARFKDLADRKHEIYDEDLQALVTEAAAAMENERFKLVSLRVCSETGEVPLASVTLSVDGE 420

Query: 421 EKRASATGSGPVDAIFKAIESVAQSGAALQIYSVNAVTQGTESQGETSVRLARGNRVVNG 480
           EK  SA GSGPVDA FKAIE++  SG  L +YSVN +T GT++QGE +VRL +  RVVNG
Sbjct: 421 EKSGSAEGSGPVDASFKAIETIVPSGTELLLYSVNNITSGTDAQGEVTVRLEKAGRVVNG 480

Query: 481 QGADTDVLVATAKAYLSALSKL 502
           QGADTD+++A+AKAYLSAL++L
Sbjct: 481 QGADTDIVIASAKAYLSALNRL 502


Lambda     K      H
   0.313    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 711
Number of extensions: 19
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 516
Length adjustment: 35
Effective length of query: 482
Effective length of database: 481
Effective search space:   231842
Effective search space used:   231842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)

Align candidate WP_077278977.1 B1C78_RS09770 (2-isopropylmalate synthase)
to HMM TIGR00973 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.25840.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25840.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.