Align Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 (characterized)
to candidate WP_077279295.1 B1C78_RS11400 diaminopimelate epimerase
Query= SwissProt::P44859 (274 letters) >NCBI__GCF_002000365.1:WP_077279295.1 Length = 278 Score = 311 bits (798), Expect = 8e-90 Identities = 159/272 (58%), Positives = 196/272 (72%), Gaps = 2/272 (0%) Query: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDP-ELDFH 59 +QFSKMHGLGNDFVV+D + Q V TP+ +R LANR G+G DQ+L+VE P DP DF Sbjct: 3 LQFSKMHGLGNDFVVIDAIGQAVELTPDQVRLLANRRLGVGCDQVLLVERPSDPARADFR 62 Query: 60 YRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMG 119 YRIFNADG+EV QCGNGARCFA FV +GLT K DI V T G + L V+ D Q+ V+MG Sbjct: 63 YRIFNADGNEVEQCGNGARCFAVFVRERGLTAKDDIPVETPAGIIRLRVQPDGQVTVDMG 122 Query: 120 EPIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLL 179 P +P +IPF A + Y L + +T GAVSMGNPH V++V+++QTA V +LGPL+ Sbjct: 123 PPKLKPWQIPFEAPEALPAYPLEVEGETFEIGAVSMGNPHAVLRVENVQTAPVARLGPLI 182 Query: 180 ESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQ 239 E HERFP RVN GFMQ+ + I+LRVYERG GET ACG+GACAAV VG +QGLL+ V Sbjct: 183 EGHERFPRRVNVGFMQVQSSGEIRLRVYERGVGETLACGTGACAAVVVGRIQGLLDERVA 242 Query: 240 VDLPGGSLMIEWNGVGH-PLYMTGEATHIYDG 270 VDLPGG L+I+W G P+ MTG AT ++ G Sbjct: 243 VDLPGGRLVIDWPGQEEAPVLMTGPATQVFTG 274 Lambda K H 0.321 0.139 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 263 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 274 Length of database: 278 Length adjustment: 25 Effective length of query: 249 Effective length of database: 253 Effective search space: 62997 Effective search space used: 62997 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.7 bits)
Align candidate WP_077279295.1 B1C78_RS11400 (diaminopimelate epimerase)
to HMM TIGR00652 (dapF: diaminopimelate epimerase (EC 5.1.1.7))
../bin/blast/fastacmd -i /tmp/list.18906.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18906.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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