Alignments for a candidate for ilvE in Thioalkalivibrio denitrificans ALJD

Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate WP_077279552.1 B1C78_RS12740 branched-chain amino acid transaminase

Query= BRENDA::O86428
         (307 letters)



>NCBI__GCF_002000365.1:WP_077279552.1
          Length = 306

 Score =  461 bits (1185), Expect = e-134
 Identities = 221/306 (72%), Positives = 260/306 (84%)

Query: 1   MSMADRDGVIWYDGELVQWRDATTHVLTHTLHYGMGVFEGVRAYDTPQGTAIFRLQAHTD 60
           MSMADRDG+IWYDGE+V WRDATTHVLTHTLHYGMGVFEGVRAY T +G AIFRLQ HT 
Sbjct: 1   MSMADRDGLIWYDGEMVPWRDATTHVLTHTLHYGMGVFEGVRAYPTERGPAIFRLQDHTR 60

Query: 61  RLFDSAHIMNMQIPYSRDEINEATRAAVRENNLESAYIRPMVFYGSEGMGLRASGLKVHV 120
           RLF SA I+ M IPY+ DE+NEA +A+VREN+L+SAYIRPM FYGSEGMGLRA  LKVH 
Sbjct: 61  RLFRSARILGMTIPYTEDELNEAQKASVRENHLKSAYIRPMCFYGSEGMGLRADNLKVHG 120

Query: 121 IIAAWSWGAYMGEEALQQGIKVRTSSFTRHHVNISMTRAKSNGAYINSMLALQEAISGGA 180
           I+AAW WGAY+G E L++GI+++TSSF RHHVNI+M +AK+NG Y+NSM+ALQEA+S G 
Sbjct: 121 IVAAWEWGAYLGAENLERGIRIKTSSFNRHHVNITMCKAKANGNYMNSMMALQEALSCGY 180

Query: 181 DEAMMLDPEGYVAEGSGENIFIIKDGVIYTPEVTACLNGITRNTILTLAAEHGFKLVEKR 240
           DEA++LD EGYV+EGSGEN F++ DGVIYTPE+T+ L+GITR TILTLAAE G ++ EKR
Sbjct: 181 DEALLLDVEGYVSEGSGENFFMVCDGVIYTPELTSALDGITRKTILTLAAEEGIEVREKR 240

Query: 241 ITRDEVYIADEAFFTGTAAEVTPIREVDGRKIGAGRRGPVTEKLQKAYFDLVSGKTEAHA 300
           ITRDEVY+ADEAFFTGTAAEVTPIRE+D R IG G RGP+TE+LQ  YFD+V  +   H 
Sbjct: 241 ITRDEVYVADEAFFTGTAAEVTPIRELDRRPIGNGGRGPITERLQTLYFDVVHARNGRHE 300

Query: 301 EWRTLV 306
           EW T V
Sbjct: 301 EWLTFV 306


Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 425
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 306
Length adjustment: 27
Effective length of query: 280
Effective length of database: 279
Effective search space:    78120
Effective search space used:    78120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_077279552.1 B1C78_RS12740 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.18602.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18602.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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