Alignments for a candidate for trpA in Thioalkalivibrio denitrificans ALJD

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate WP_077280014.1 B1C78_RS15180 tryptophan synthase subunit alpha

Query= uniprot:M4NLA4
         (266 letters)



>NCBI__GCF_002000365.1:WP_077280014.1
          Length = 266

 Score =  268 bits (685), Expect = 9e-77
 Identities = 142/265 (53%), Positives = 181/265 (68%), Gaps = 2/265 (0%)

Query: 1   MSRIDRRFAALKAANRTGLIPFVTAGDPSPEHMVALMHALVDAGADLIELGVPFSDPMAD 60
           MSR+  RF AL+AA R  LIP+VTAGDP+P++ V LMHA+V+AG D+IELGVPFSDPMAD
Sbjct: 1   MSRLAPRFEALRAAGRKALIPYVTAGDPNPDNTVPLMHAMVEAGVDIIELGVPFSDPMAD 60

Query: 61  GPVIQHASERAIAKGVGLADVLGWVAAFRQHDADTPIVLMGYLNPIETHGYARFAGEAVQ 120
           GPVIQ A ERA+   V L  V+G V  FR+ D DTP+VLMGYLNP+E  GY  FA  A  
Sbjct: 61  GPVIQQACERALRHHVSLRQVIGMVKTFREKDGDTPVVLMGYLNPVEIMGYEAFADAASS 120

Query: 121 AGVDGVLLVDCPLEES-AVLQPLRDAGLQRILLAAPTTEPSRMAQLCGSAEGFLYYVSFA 179
           AGVDG+L VD P EE   ++Q LR   +  I L APT+  +R+ ++C +A GF+YYVS  
Sbjct: 121 AGVDGLLTVDLPPEEGHDLVQALRARDIDPIYLLAPTSHEARIRRICAAASGFVYYVSLK 180

Query: 180 GITGAAHLSTGDIAARVADVRARAKAPVAVGFGIRDAASAKAIAGFADAVVIGSALVDRL 239
           G+TGAA L   ++  +VA +R+    PV VGFGI DA SA  ++  ADAV++GSALV R+
Sbjct: 181 GVTGAATLDVDEVGRKVAAIRSHTDLPVGVGFGIGDAESAARVSAVADAVIVGSALVRRI 240

Query: 240 AGATDAGEITRR-TQAFLAPIRAAL 263
           A   +  E  RR     LA +R A+
Sbjct: 241 AEHENDPEAGRRAVSELLAGMRKAM 265


Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 242
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 266
Length adjustment: 25
Effective length of query: 241
Effective length of database: 241
Effective search space:    58081
Effective search space used:    58081
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_077280014.1 B1C78_RS15180 (tryptophan synthase subunit alpha)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.17288.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17288.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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