Alignments for a candidate for ilvD in Paucidesulfovibrio gracilis DSM 16080

Align dihydroxy-acid dehydratase subunit (EC 4.2.1.9) (characterized)
to candidate WP_078718407.1 B5D49_RS14320 dihydroxy-acid dehydratase

Query= metacyc::MONOMER-11919
         (549 letters)



>NCBI__GCF_900167125.1:WP_078718407.1
          Length = 554

 Score =  586 bits (1510), Expect = e-172
 Identities = 292/555 (52%), Positives = 405/555 (72%), Gaps = 7/555 (1%)

Query: 1   MKSDTIKRGIQRAPHRSLLARCGLTDDDFEKPFIGIANSYTDIVPGHIHLRELAEAVKEG 60
           M+S  +  G+++APHRSL+   G+T ++ ++P +G+ N++ +++PGH+HLR +A+AVK G
Sbjct: 1   MRSKKMTGGLEKAPHRSLMHALGITREEMDRPLVGVCNAFNEVIPGHVHLRTIADAVKNG 60

Query: 61  VNAAGGVAFEFNTMAICDGIAMNHDGMKYSLASREIVADTVESMAMAHALDGLVLLPTCD 120
           V  +GG   EF  + +CDG+AMNH+GM++SL SREI+AD++E MA AH  D LV +  CD
Sbjct: 61  VRMSGGTPMEFPAIGVCDGLAMNHEGMRFSLPSREIIADSIEIMATAHPFDALVCVTNCD 120

Query: 121 KIVPGMLMAAARLDIPAIVVTGGPMLPGEFKGRKVDLINVYEGVGTVSAGEMSEDELEEL 180
           KIVPGMLMA  RL+IPA++V+GGPML G+ K +  DLI V+EGVG V  G+MSE EL EL
Sbjct: 121 KIVPGMLMAMLRLNIPAVIVSGGPMLAGKQKKQVSDLITVFEGVGRVKRGDMSETELAEL 180

Query: 181 ERCACPGPRSCAGLFTANTMACLTEALGMSLPGCATAHAVSSRKRQIARLSGKRIVEMVQ 240
           E CACP   SC+G+FTANTM CL+EA+G++LPG  T  A ++ + ++A+ +G  ++ +++
Sbjct: 181 EECACPTCGSCSGMFTANTMNCLSEAIGLALPGNGTIPATAAARVRLAKQAGMAVMNLLE 240

Query: 241 ENLKPTMIMSQEAFENAVMVDLALGGSTNTTLHIPAIAAEIDGLNINLDLFDELSRVIPH 300
           + + P  I++ ++  NAV +D+ALGGSTNT LH+PA+  E + L ++L+LFDE+SR +P+
Sbjct: 241 QGITPRDIVTTDSVRNAVAMDMALGGSTNTVLHLPAVFHEAE-LELSLELFDEISRQVPN 299

Query: 301 IASISPAGEHMMLDLDRAGGIPAVLKTLED--HINRECVTCTGRTVQENIE--NVKVGHR 356
           I  +SPAG + + DLD AGGIPAV++ + D   ++ +C+T TG+TV +N++  N  V   
Sbjct: 300 ICKLSPAGHYHIEDLDAAGGIPAVMRRVADTGALHLDCLTVTGKTVGQNLDDLNADVLDP 359

Query: 357 DVIRPLDSPVHSEGGLAILRGNLAPRGSVVKQGAVAEDMMVHEGPAKVFNSEDECMEAIF 416
           DVIRPLD     +GG+AILRGNLA +G VVKQ AVA +MM   G A+VF+SE++ +EAI 
Sbjct: 360 DVIRPLDKAYSPQGGIAILRGNLAEQGCVVKQSAVAPEMMQRTGKARVFDSEEDAVEAIL 419

Query: 417 GGRIDEGDVIVIRYEGPKGGPGMREMLNPTSAIAGMGL-ERVALITDGRFSGGTRGPCVG 475
           G  I  GDV+VIRYEGPKGGPGMREML PTSAIAGMGL E VALITDGRFSGGTRG  +G
Sbjct: 420 GNGIKAGDVVVIRYEGPKGGPGMREMLTPTSAIAGMGLGESVALITDGRFSGGTRGAAIG 479

Query: 476 HVSPEAMEDGPLAAVNDGDIIRIDIPSRKLEVDLSPREIEERLQSAVKPRRSVKG-WLAR 534
           HVSPEA E G +  V +GD IRIDIP R++E+ +   E+ +R Q+    ++ V   +L R
Sbjct: 480 HVSPEAAEGGLIGLVREGDSIRIDIPERRIELLVDETELAQRRQNWTPLQKEVTSPFLRR 539

Query: 535 YRKLAGSADTGAVLR 549
           Y     SA TG V+R
Sbjct: 540 YAARVTSAATGGVMR 554


Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 968
Number of extensions: 46
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 554
Length adjustment: 36
Effective length of query: 513
Effective length of database: 518
Effective search space:   265734
Effective search space used:   265734
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_078718407.1 B5D49_RS14320 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.13984.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13984.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.