Alignments for a candidate for argE in Nitriliruptor alkaliphilus DSM 45188

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate WP_083442036.1 NITAL_RS25895 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>NCBI__GCF_000969705.1:WP_083442036.1
          Length = 385

 Score =  270 bits (691), Expect = 4e-77
 Identities = 151/374 (40%), Positives = 213/374 (56%), Gaps = 12/374 (3%)

Query: 6   ILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEARGYI 65
           +L  LVG  +     N D+V+++ G L++H I  + +P P+G ++N+ A IGP    G +
Sbjct: 7   LLATLVGMDTTSSRSNLDLVAFVEGLLDAHDIPHERVPSPDGTKANLLARIGPDVPGGVV 66

Query: 66  ISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRPL 125
           ++GH D VP     W+ DPF +  E  RLYGRG TDMKGFLA VLAA+P LA   L RPL
Sbjct: 67  LTGHTDCVPVVGQPWSRDPFTVHEEDGRLYGRGVTDMKGFLAVVLAALPDLAGAGLARPL 126

Query: 126 HLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGRS 185
            LAL+YDEE G  G P  + RL +   +P   I+GEPT M  + AHKG  A   TV G  
Sbjct: 127 TLALTYDEELGTLGAPSAVLRLADAYPRPAAVIVGEPTSMAVVTAHKGVRAFTTTVDGLD 186

Query: 186 GHSSRPDQGLNAIHGVAGVLT--QAVAEADRLVGGPFEHVFEPPYSSLQIGTVKGGQAVN 243
           GHSSRPD   NA+  +  ++T    VAE  R      +  F+PPY++  + TV GGQA+N
Sbjct: 187 GHSSRPDLAANAVAALGRIVTYIDDVAEQHRTDPTRHDERFDPPYTTFNLATVTGGQAIN 246

Query: 244 IIPDSCEVEFEARAISGVDPAELLAPVRKTAE--ALTTLGFEVEWQELSAYP-----ALS 296
           I+P   E+ +E R +   D   +   V +  +   L  L  +V    +S+       ALS
Sbjct: 247 IVPRRAELTWEYRPVPADDSDAIRRDVDRFVQEHVLPRLRRDVHVGAVSSVEDAVARALS 306

Query: 297 LEPDAPLAALLEELTGREALPA--VSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYIL 354
            E D     L+  +TG +  PA  V++ T+ G FQ AG   ++CGPGDI +AH+PDE++ 
Sbjct: 307 AEEDGEAERLVRSITG-DTSPARTVAFATDGGHFQAAGWSTVVCGPGDIDQAHQPDEWLA 365

Query: 355 IDELMACRAMVEAL 368
           +++L AC+  V  L
Sbjct: 366 LEQLEACQRFVVGL 379


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 386
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 385
Length adjustment: 30
Effective length of query: 344
Effective length of database: 355
Effective search space:   122120
Effective search space used:   122120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_083442036.1 NITAL_RS25895 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.21347.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21347.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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