Alignments for a candidate for thrC in Desulfacinum hydrothermale DSM 13146

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_084055578.1 B9A12_RS00450 threonine synthase

Query= reanno::Miya:8501211
         (492 letters)



>NCBI__GCF_900176285.1:WP_084055578.1
          Length = 499

 Score =  573 bits (1478), Expect = e-168
 Identities = 293/485 (60%), Positives = 354/485 (72%), Gaps = 10/485 (2%)

Query: 15  PTARTRMEYVCLGCGERRGIDELLYTCPSCGGVYLLEDLDFDTLAEQRTGPEWRALFDAR 74
           P    R  Y CLGC    G++ELLYTCP CG V ++ D D+D L +   GP WR +FD R
Sbjct: 16  PEVAGRYIYRCLGCQATFGVEELLYTCPQCGSVLMIRDEDWDRL-KAIPGPTWRRIFDYR 74

Query: 75  AATRTTALRGIFRFYELMAPVLEEEDIVYLGEGNTPIVEAAPVLRDAVGIPFAFKNDGQN 134
           A     AL+GI+RF+EL+  +L  + ++YLGEG+TP+V+A   +RD VG PF FKNDGQN
Sbjct: 75  AMVTEPALKGIYRFHELLGSILPLDAVIYLGEGHTPVVQANAKMRDWVGRPFFFKNDGQN 134

Query: 135 PSASFKDRGMACAFSYLKALVRKHGWDEVLTVCASTGDTSAAAALYASYVGGPVKSVVLL 194
           PSASFKDRGMA AFSYL  L++  G  +VL VCASTGDTSAAAALYASY+   V S VLL
Sbjct: 135 PSASFKDRGMASAFSYLNHLIKSQGLTQVLAVCASTGDTSAAAALYASYLVDGVTSAVLL 194

Query: 195 PHGKVTPQQLSQPLGSGATVLEIPGVFDDCMKVVEHLAENYRVALLNSKNSWRILGQESY 254
           P GKVTPQQLSQPLGSGA V+EIPGVFDDCMK+VE+LAE+Y VAL+NSKN+WRILGQESY
Sbjct: 195 PQGKVTPQQLSQPLGSGARVIEIPGVFDDCMKIVEYLAEHYPVALMNSKNAWRILGQESY 254

Query: 255 AFEVAQWYGWDMKGQCVFVPIGNAGNVTAIMAGFLKLLRLGVIDALPRVIGVQSHHADPV 314
           ++E+AQ + +++    V VPIGNAGN+TA+MAGFLKL  LG+I  LP ++GVQSHHADPV
Sbjct: 255 SYEIAQAFDYEVADLVVTVPIGNAGNITAVMAGFLKLHDLGIITQLPWILGVQSHHADPV 314

Query: 315 WRYYSQPDPATRTYAPVTVQPSVAQAAMIGNPVSFPRVKALADRFIAEGGERAFSVVQVT 374
           +RYY +PDP  R + PVTVQPSVAQAAMIGNPVS PRV  L ++F +  G++A  VVQVT
Sbjct: 315 YRYYLEPDPQKREFRPVTVQPSVAQAAMIGNPVSMPRVVQLVEQFRSIAGDQAVQVVQVT 374

Query: 375 EQEIMDAMIRGNRHGHIACTQGGECLAGLIKARELGLVSQGEHAVLDATAHSLKFAGFQD 434
           EQEIMDAM+R NR+GHIACTQGGECLAG  +A   G +  G+  VLDATAH+LKFA FQ+
Sbjct: 375 EQEIMDAMLRANRNGHIACTQGGECLAGWRRAVADGAIPDGKVGVLDATAHALKFAIFQE 434

Query: 435 MYFTNSFPPEYGVTPDASLANAPALVVSPEDKARLSP---------EAYTLAAAKAVVAR 485
            YF + F PE+GV P   L N P LV  P+      P          A+  A   AV + 
Sbjct: 435 KYFEDRFEPEFGVVPKEELRNRPVLVRPPQGVPCPVPGAGMDAESFRAFVTATGDAVASM 494

Query: 486 LGLAK 490
           LGL K
Sbjct: 495 LGLRK 499


Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 734
Number of extensions: 27
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 499
Length adjustment: 34
Effective length of query: 458
Effective length of database: 465
Effective search space:   212970
Effective search space used:   212970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate WP_084055578.1 B9A12_RS00450 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.9721.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9721.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.