Alignments for a candidate for asd in Desulfacinum hydrothermale DSM 13146

Align aspartate semialdehyde dehydrogenase subunit (EC 1.2.1.11) (characterized)
to candidate WP_084057661.1 B9A12_RS09570 aspartate-semialdehyde dehydrogenase

Query= metacyc::MONOMER-6564
         (346 letters)



>NCBI__GCF_900176285.1:WP_084057661.1
          Length = 339

 Score =  354 bits (909), Expect = e-102
 Identities = 182/343 (53%), Positives = 245/343 (71%), Gaps = 8/343 (2%)

Query: 4   GLHVAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEASPES 63
           G  VAVVGATGAVG  M++ LE+R F +  L LL+S RS G +++F+G +++V+E + +S
Sbjct: 5   GYRVAVVGATGAVGTTMVRVLEERRFPVRELKLLASSRSVGKQISFRGAQVSVEELTEDS 64

Query: 64  FEGVNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLHEHNG 123
           F+G+++ALFSAG SVS+  AP A + G +V+DN+SAFRMD +TPLVVPEVN   +  H G
Sbjct: 65  FQGLDVALFSAGASVSRRFAPIAARVGCVVVDNSSAFRMDPHTPLVVPEVNPHAVRHHQG 124

Query: 124 IIANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAILNKEEI 183
           IIANPNCSTIQMV AL+PI+ A G+ +++V+T+QAVSG G +A++EL  Q +A +  E +
Sbjct: 125 IIANPNCSTIQMVVALKPIQDAVGIQRIVVTTFQAVSGTGMKAIQELRRQVEATVKGEPL 184

Query: 184 EPEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEEMKMINETKKIMHMPDLQVAATCVR 243
             E+ P       +QIAFN +P I  F D+GYT EEMKM+NET+KI   PD+QV AT VR
Sbjct: 185 PQEVYP-------HQIAFNCLPHIGSFLDSGYTEEEMKMVNETRKIFEDPDIQVCATTVR 237

Query: 244 LPIQTGHSESVYIEIDRDDATVEDIKNLLKEAPGVTLQDDPSQQLYPMPADAVGKNDVFV 303
           +P+  GHSESV +E+ R    V+D   LL +A GV + DDP    YPMP DA G+++ FV
Sbjct: 238 VPVYYGHSESVAVEM-RKPLEVQDAVALLSKAQGVQVVDDPLAGRYPMPLDAEGRDETFV 296

Query: 304 GRIRKDLDRANGFHLWVVSDNLLKGAAWNSVQIAESLKKLNLV 346
           GRIRKD+   NG   WVV+DN+ KGAA N+VQIAE L +  L+
Sbjct: 297 GRIRKDISIPNGLVFWVVADNIRKGAATNAVQIAELLVQEGLL 339


Lambda     K      H
   0.314    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 299
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 339
Length adjustment: 29
Effective length of query: 317
Effective length of database: 310
Effective search space:    98270
Effective search space used:    98270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)

Align candidate WP_084057661.1 B9A12_RS09570 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.14800.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14800.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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