Alignments for a candidate for leuB in Desulfacinum hydrothermale DSM 13146

Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate WP_084058965.1 B9A12_RS15255 3-isopropylmalate dehydrogenase

Query= BRENDA::Q8E9N3
         (364 letters)



>NCBI__GCF_900176285.1:WP_084058965.1
          Length = 364

 Score =  477 bits (1227), Expect = e-139
 Identities = 242/359 (67%), Positives = 283/359 (78%), Gaps = 2/359 (0%)

Query: 4   QIAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGC 63
           ++AVLAGDGIGPEVMAEA KVL+A EA FG  ++  + DVGG AID HG  LP  TL  C
Sbjct: 6   RVAVLAGDGIGPEVMAEALKVLQAAEAVFGFRLQCEQGDVGGCAIDRHGHALPAGTLSLC 65

Query: 64  EAADAILFGSVGGPKWEKLPPNEQPERGALLPLRGHFELFCNLRPAKLHDGLEHMSPLRS 123
           EA+DAILFGSVGGPKWE LPP +QPER ALLPLR  F+LFCNLRP+++   L   SPLRS
Sbjct: 66  EASDAILFGSVGGPKWESLPPEQQPERAALLPLRKRFDLFCNLRPSRVFPPLAGASPLRS 125

Query: 124 DISARGFDVLCVRELTGGIYFGKPKGRQGEGESEEAFDTMRYSRREISRIARIAFEAARG 183
           DI   GFD+LCVRELT GIYFG+PKGR+GEG  E AFDTM Y R+EI RIAR AFE AR 
Sbjct: 126 DIVGDGFDILCVRELTSGIYFGRPKGREGEGADERAFDTMCYRRKEIERIARKAFEIARL 185

Query: 184 RRKKVTSVDKANVLACSVLWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPDEFDVMLC 243
           R+K+VTS+DKANVL   V WRQVV EV+ D+PDV+L H+YIDNA+MQLLR P +FDV+LC
Sbjct: 186 RKKRVTSIDKANVLTTMVFWRQVVNEVSRDYPDVQLNHMYIDNASMQLLRDPHQFDVLLC 245

Query: 244 SNLFGDILSDEIAMLTGSMGLLSSASMNSTGFGLFEPAGGSAPDIAGKGIANPIAQILSA 303
            N+FGDILSD+ AM+TGSMGLL+SAS+N T FGL+EPAGGSAPDIAGKGIANPIAQILSA
Sbjct: 246 GNMFGDILSDQCAMMTGSMGLLASASLNETNFGLYEPAGGSAPDIAGKGIANPIAQILSA 305

Query: 304 ALMLRHSLKQEEAASAIERAVTKALNSGYLTGELLSSDQRHKAKTTVQMGDFIADAVKA 362
           A+MLRHS   E AA AIERAV + + +G LT ++       +A  T QMGD +A  V+A
Sbjct: 306 AMMLRHSFGHEAAARAIERAVEETIAAGVLTRDIARDPA--QAVGTAQMGDAVASRVRA 362


Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 455
Number of extensions: 15
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 364
Length adjustment: 29
Effective length of query: 335
Effective length of database: 335
Effective search space:   112225
Effective search space used:   112225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_084058965.1 B9A12_RS15255 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.10023.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10023.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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