Alignments for a candidate for argI in Nitratiruptor tergarcus DSM 16512

Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_084275279.1 B8779_RS04075 ornithine carbamoyltransferase

Query= BRENDA::Q9PNU6
         (306 letters)



>NCBI__GCF_900176045.1:WP_084275279.1
          Length = 308

 Score =  335 bits (858), Expect = 1e-96
 Identities = 166/308 (53%), Positives = 227/308 (73%), Gaps = 7/308 (2%)

Query: 1   MKHFLTLRDFSKEEILSLVNHASELKKEPKK-----LLQDKTLAMIFEKNSTRTRMAFEL 55
           M+HFLTL+DF+KEEIL ++  A ++K E K+      L+++TLAMIFEK+STRTR++FE+
Sbjct: 1   MRHFLTLKDFTKEEILEIITLAEQIKTETKRKEFVPYLENQTLAMIFEKSSTRTRVSFEV 60

Query: 56  AITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFARYSKAPV 115
            I +LGG  LFLS NDLQL RGEP+KDTARV+  M D VM+R  +   L EFA YSK PV
Sbjct: 61  GIYQLGGIGLFLSKNDLQLGRGEPMKDTARVVSRMCDMVMIRTFEQAKLEEFAAYSKVPV 120

Query: 116 INALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIA 175
           IN L+  YHP Q++ D  T++E+ K +N +  VA++GD NNM +SWL+  + LGF + IA
Sbjct: 121 INGLTNEYHPVQLMADYLTMREFGKAENPV--VAYVGDGNNMAHSWLMLVSKLGFTLRIA 178

Query: 176 MPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKI 235
            PK Y+ +  + E A++ A  SGAKI    D  EA+ + DVV TDTW+SMG+E+EKE+++
Sbjct: 179 TPKGYEPAKNVVEDALRFAKESGAKIEFTNDPKEAVANADVVTTDTWISMGQEDEKEKRL 238

Query: 236 KEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVVKAL 295
           K+F+G+M+D++ M++A  DAI LHCLPAYRGYEVSEEIFE HA+ IF EA NRL+  K +
Sbjct: 239 KDFQGYMVDKQMMALAKPDAIFLHCLPAYRGYEVSEEIFEAHAEEIFTEAENRLHAQKGV 298

Query: 296 LCFLDNQR 303
           + +LD +R
Sbjct: 299 MVWLDRKR 306


Lambda     K      H
   0.320    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 320
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 308
Length adjustment: 27
Effective length of query: 279
Effective length of database: 281
Effective search space:    78399
Effective search space used:    78399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_084275279.1 B8779_RS04075 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.25372.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25372.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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