Alignments for a candidate for cmutase in Nitratiruptor tergarcus DSM 16512

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_084275314.1 B8779_RS04265 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_900176045.1:WP_084275314.1
          Length = 356

 Score =  237 bits (604), Expect = 4e-67
 Identities = 143/359 (39%), Positives = 206/359 (57%), Gaps = 10/359 (2%)

Query: 5   DQLKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHI 64
           ++L+ LR  IDS+D+ IL+L+++R    ++V  +K  +      A  YRPERE  +L  +
Sbjct: 3   EKLQKLREEIDSIDDAILELLNKRMEVVKKVGELKNRT-----NAPIYRPEREIAILNRL 57

Query: 65  MELNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISKPM 124
            E N+GPL+++ +  +F EI +    LE+P RVAYLGPEG+F+  AA   FG      P 
Sbjct: 58  KEKNRGPLNDKAIEAIFLEIFAVSRNLERPERVAYLGPEGSFTHQAAESRFGAMSEYLPT 117

Query: 125 AAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGE 184
            +I  VF+ V A    +GVVP+ENS +G V  TLD   + D+ I  EV + IHH     E
Sbjct: 118 HSIAAVFKSVEAQRAKYGVVPIENSIDGVVGETLDLLGKSDLKIVAEVYMPIHHSFASLE 177

Query: 185 TTKTDRITRIYSHAQSLAQCRKWLDAHY-PNVERVAVSSNADAAKRVKSEWNSAAIAGDM 243
                +I +IYS   +  QCR +L  H+  +VE++ V S A AA     E  SAAI  ++
Sbjct: 178 -EDLKKIKKIYSKDIAFGQCRNFLQEHFLEDVEQIPVESTAKAAMLAAKEPGSAAICSNI 236

Query: 244 AAQLYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLMPF 303
           AA+LY L  L E IED   N TRF+++ + +   +G DKTSI+  ++++PGAL   L  F
Sbjct: 237 AAKLYNLPILFENIEDVHTNMTRFIVLSNFKNQRSGFDKTSILAKLQDRPGALVRFLEDF 296

Query: 304 HSNGIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYPK 362
            +  I+LT+IE+RP+    + Y F+ID  GH  D   KNV E        +K LGSY K
Sbjct: 297 DAAKINLTKIESRPAEDKDFNYWFYIDFDGHVDD---KNVQEVFAKHKKEIKWLGSYAK 352


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 293
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 356
Length adjustment: 29
Effective length of query: 336
Effective length of database: 327
Effective search space:   109872
Effective search space used:   109872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_084275314.1 B8779_RS04265 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.11075.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11075.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.