Alignments for a candidate for asd in Nitratiruptor tergarcus DSM 16512

Align aspartate semialdehyde dehydrogenase subunit (EC 1.2.1.11) (characterized)
to candidate WP_084275376.1 B8779_RS04605 aspartate-semialdehyde dehydrogenase

Query= metacyc::MONOMER-6564
         (346 letters)



>NCBI__GCF_900176045.1:WP_084275376.1
          Length = 342

 Score =  331 bits (848), Expect = 2e-95
 Identities = 181/339 (53%), Positives = 236/339 (69%), Gaps = 11/339 (3%)

Query: 3   RGLHVAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEASPE 62
           R  +VAVVG TGAVG++ML+ +E+ +F +  L  L+SKRSAG+ V +KG+E TVQE + +
Sbjct: 2   RKFNVAVVGVTGAVGEEMLRVMEEVDFPVAKLVPLASKRSAGSSVEYKGKEYTVQELTED 61

Query: 63  SFE--GVNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLH- 119
            FE   + IALFSAGGSVS   AP A + GA+VIDNTS FRMD   PLVVPEVN  D+  
Sbjct: 62  IFEKEDIEIALFSAGGSVSAHYAPYAAEAGAVVIDNTSHFRMDPEVPLVVPEVNPEDIAA 121

Query: 120 -EHNGIIANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAIL 178
            +  GIIANPNCSTIQMV AL+P+ + +G+ +V V+TYQA SGAG  A+ E+ +Q +   
Sbjct: 122 WKTKGIIANPNCSTIQMVQALKPLDEKFGITRVDVATYQATSGAGKSAMDEMVNQMKDFF 181

Query: 179 NKEEIEPEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEEMKMINETKKIMHMPDLQVA 238
           N +  E E       K  +QIA N IPQIDKF DNGYT EEMKM+NETKKIMH  +++V+
Sbjct: 182 NFKLDESE-----KKKFPHQIALNVIPQIDKFLDNGYTKEEMKMVNETKKIMHK-NIEVS 235

Query: 239 ATCVRLPIQTGHSESVYIEIDRDDATVEDIKNLLKEAPGVTLQDDPSQQLYPMPADAVGK 298
           ATCVR+P+  GHSE+V +  ++D  T E  K  L     + + D+P + +YPMP   V K
Sbjct: 236 ATCVRVPVLRGHSEAVTVWCEKD-ITPEAAKEALYNGKNIVVMDEPQKSIYPMPITVVDK 294

Query: 299 NDVFVGRIRKDLDRANGFHLWVVSDNLLKGAAWNSVQIA 337
           N+ +VGRIRKD+ R N  H+WVV+DNL  GAA N+V+IA
Sbjct: 295 NETYVGRIRKDVYRDNVLHMWVVADNLRVGAATNAVRIA 333


Lambda     K      H
   0.314    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 342
Number of extensions: 9
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 342
Length adjustment: 29
Effective length of query: 317
Effective length of database: 313
Effective search space:    99221
Effective search space used:    99221
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)

Align candidate WP_084275376.1 B8779_RS04605 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.6492.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6492.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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