Alignments for a candidate for cmutase in Nitratiruptor tergarcus DSM 16512

Align isochorismate lyase (EC 4.2.99.21) (characterized)
to candidate WP_084275871.1 B8779_RS07285 chorismate mutase

Query= BRENDA::Q51507
         (101 letters)



>NCBI__GCF_900176045.1:WP_084275871.1
          Length = 99

 Score = 51.6 bits (122), Expect = 2e-12
 Identities = 28/91 (30%), Positives = 50/91 (54%)

Query: 5  EDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERARW 64
          ++C  L ++R+AID+ID +IV+ +  R  YVK A++FK S   I + ER+  +L      
Sbjct: 4  KNCNSLEEVRDAIDKIDEEIVKLIALRSKYVKQAAKFKESVEEIKSDERINDVLNHVRHL 63

Query: 65 AEENGLDAPFVEGLFAQIIHWYIAEQIKYWR 95
          A   G+    V  +F  +I   +  +I+ ++
Sbjct: 64 AATLGISPNLVADIFKILIDKMVEMEIEEFK 94


Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 99
Length adjustment: 11
Effective length of query: 90
Effective length of database: 88
Effective search space:     7920
Effective search space used:     7920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.0 bits)
S2: 39 (19.6 bits)

Align candidate WP_084275871.1 B8779_RS07285 (chorismate mutase)
to HMM PF01817 (CM_2)

Software error:

../bin/blast/fastacmd -i /tmp/list.15083.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15083.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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