Alignments for a candidate for gatB in Nitratiruptor tergarcus DSM 16512

Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Asp/Glu-ADT subunit B; EC 6.3.5.- (characterized)
to candidate WP_084275993.1 B8779_RS07835 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB

Query= SwissProt::Q9RF06
         (475 letters)



>NCBI__GCF_900176045.1:WP_084275993.1
          Length = 476

 Score =  441 bits (1135), Expect = e-128
 Identities = 229/476 (48%), Positives = 317/476 (66%), Gaps = 5/476 (1%)

Query: 1   MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAM 60
           M FE VIGLEVHV+L T +KMF   P  F    N NT  + LA PG LPV+N+ AV  AM
Sbjct: 1   MEFEVVIGLEVHVQLNTKTKMFCSCPTSFAQRQNKNTCPVCLALPGALPVINEEAVKKAM 60

Query: 61  RAAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEV-DGETKRIGIT 119
               A++  I  +S F+RKNYFYPD PK YQISQF+ PI E GY+ I+  DG  ++IGIT
Sbjct: 61  MFGWAIDATINKKSIFNRKNYFYPDLPKGYQISQFEIPIVERGYLFIDKEDGSKRKIGIT 120

Query: 120 RLHMEEDAGKSTHKGEYSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGV 179
           R H+EEDAGK+ H+GE S VDLNR GTPL+EIVS+PDIRS +EA  YL+KL +I++Y  +
Sbjct: 121 RAHLEEDAGKNIHEGEISKVDLNRAGTPLLEIVSDPDIRSSEEAVQYLKKLHAIVRYLDI 180

Query: 180 SDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEELLSG- 238
           SD  M+EGS RCDAN+S+RP G EK  T+ E+KNLNSF ++++ ++YE +R  E    G 
Sbjct: 181 SDANMQEGSFRCDANVSIRPKGDEKLYTRVEIKNLNSFRFIQRAIDYEVQRHIEAWEDGV 240

Query: 239 --GEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELP 296
              E+ QETR FD + G T  MR KE S DYRYFP+PD++PL I + + E+ +  IPELP
Sbjct: 241 YDEEVVQETRLFDTNKGVTRSMRGKEESADYRYFPDPDLLPLVIPEEFFEKTK-NIPELP 299

Query: 297 DERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQ 356
           D+++ +++ E G+  YDA +L  +KE + FFE  +  G + K    WL   +   LN+  
Sbjct: 300 DQKRDRFIQEYGIKPYDAALLAESKERAHFFEEMVATGIEPKNAVTWLTVELAARLNEKG 359

Query: 357 VELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEA 416
           +++  + +  + LA +++ IED T+S K AK V   L  +  +  + +E  GL QI+D  
Sbjct: 360 LDITSSPVDSQKLAKLVQRIEDKTISGKAAKDVLDYLMEESVDVDEAIEKLGLKQITDTG 419

Query: 417 TLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQEL 472
            +   ++E L  NE+ V +YK GK K  GF VGQ+MKASKG+A+P+LVN+LL+++L
Sbjct: 420 AIETMIDEILAKNEEKVAEYKAGKEKLFGFFVGQVMKASKGKADPKLVNELLRKKL 475


Lambda     K      H
   0.313    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 655
Number of extensions: 24
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 476
Length adjustment: 33
Effective length of query: 442
Effective length of database: 443
Effective search space:   195806
Effective search space used:   195806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate WP_084275993.1 B8779_RS07835 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.31704.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31704.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.