Alignments for a candidate for asd in Tistlia consotensis USBA 355

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_085121995.1 B9O00_RS08315 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_900177295.1:WP_085121995.1
          Length = 337

 Score =  340 bits (873), Expect = 2e-98
 Identities = 182/335 (54%), Positives = 233/335 (69%), Gaps = 4/335 (1%)

Query: 5   FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRF-NGKTVRVQNVEEFD 63
           + VA+ GATG VG  ML  L ER+FPVDE+  LASERS G+   F + + ++VQ++  FD
Sbjct: 3   YRVAVVGATGNVGREMLSTLAERQFPVDEVVALASERSAGQKVSFGDDQVLQVQDLASFD 62

Query: 64  WSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRN 123
           +  + I LFS G ++SA++AP AA AG +VIDNTS FR D D+PLVVPEVN EAIA +  
Sbjct: 63  FKGIDIGLFSPGAKVSAEFAPRAARAGTIVIDNTSQFRMDPDVPLVVPEVNREAIAGYPR 122

Query: 124 RNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGY 183
           RNIIANPNCSTIQM+VALKP++D V I R+ V+TYQSVSGAGK  +DEL  QT  +    
Sbjct: 123 RNIIANPNCSTIQMVVALKPLHDRVPIRRVVVSTYQSVSGAGKEAMDELFNQTRGIYVND 182

Query: 184 PAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFY 243
           P +T  F +QIAFN IPQID FM++G TKEE KM  ET+KI  DP I V+ TCVRVP F 
Sbjct: 183 PIKTEIFPKQIAFNVIPQIDVFMEDGSTKEEWKMAVETKKIL-DPRIKVHATCVRVPTFI 241

Query: 244 GHAEAVHVETRAPIDAEQVMDMLEQTDGIELF--RGADFPTQVRDAGGKDHVLVGRVRND 301
           GHAEAV++E    +D  +  ++L    G+ +F  R  +      +  G+D V V R+RND
Sbjct: 242 GHAEAVNIEFEDELDENEAREILRDAPGVSVFDHRQTEGYVTPAECAGEDAVYVSRIRND 301

Query: 302 ISHHSGINLWVVADNVRKGAATNAVQIAELLVRDY 336
            +   G++LWVV+DN+RKGAA NAVQIAE L  +Y
Sbjct: 302 PTIDHGLSLWVVSDNLRKGAALNAVQIAEALAEEY 336


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 339
Number of extensions: 13
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 337
Length adjustment: 28
Effective length of query: 309
Effective length of database: 309
Effective search space:    95481
Effective search space used:    95481
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_085121995.1 B9O00_RS08315 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.20114.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20114.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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