Alignments for a candidate for dapC in Tistlia consotensis USBA 355

Align phosphoserine aminotransferase monomer (EC 2.6.1.52; EC 2.6.1.1) (characterized)
to candidate WP_085123419.1 B9O00_RS14565 phosphoserine transaminase

Query= metacyc::MONOMER-15918
         (370 letters)



>NCBI__GCF_900177295.1:WP_085123419.1
          Length = 391

 Score =  482 bits (1240), Expect = e-141
 Identities = 237/379 (62%), Positives = 280/379 (73%), Gaps = 10/379 (2%)

Query: 2   KPTRVPKNPCFSSGPCAKHPGYSVEELKDTPFGRSHRSKPGKEKLAEAIKRTRDMLGLPD 61
           KP R P NP FSSGPCAK PG+S   L     GRSHR+K GK +LAE I+R+  +LGLP 
Sbjct: 6   KPGRRPANPNFSSGPCAKRPGWSPAALTGAVVGRSHRAKVGKARLAEVIERSATLLGLPS 65

Query: 62  DYFVGIVPASDTGAFEMCLWSMLGCRGVDVLVWESFSKGWATDITKQLKLKDTRVFEAEY 121
           D+ + IVPASDTGA EM LWS+LG RGV++L WESF  GWATD+ KQLKLKD RV EA Y
Sbjct: 66  DWRLAIVPASDTGAVEMALWSLLGARGVEMLAWESFGSGWATDVVKQLKLKDARVLEAGY 125

Query: 122 GKLPDLKKVDFKNDVVFVWNGTTSGVKVPNADWIPDDREGVTLCDATSAIFAMDIPYHKL 181
           G LPDL  VD+  DVVF WNGTTSGV+VP+ADWIP DR G+ +CDATSA FAM + + KL
Sbjct: 126 GALPDLSAVDWDCDVVFTWNGTTSGVRVPDADWIPADRGGLAICDATSAAFAMPLDFAKL 185

Query: 182 DVITFSWQKVLGGEGAHGMLILSPRAVQRLESYTPAWPLPKIFRLTKGGKLNKDIFAGST 241
           DV+T+SWQKVLGGE AHGML L PRAV+RLES++PAWPLPKIFR+TKGGKL + IF G T
Sbjct: 186 DVVTWSWQKVLGGEAAHGMLALGPRAVERLESHSPAWPLPKIFRMTKGGKLIEGIFKGET 245

Query: 242 INTPSMLANEDWLATLKWAESVGGLKQLIRRTNENLAVFEAFVAKNNWIHFLAETKEIRS 301
           INTPSML  ED L  L+WAE +GGL+ L+ R+  NLA  EA+V  ++W  FLAE  EIRS
Sbjct: 246 INTPSMLCVEDALDGLRWAEQIGGLEALVARSRANLAAVEAWVEASDWAGFLAERPEIRS 305

Query: 302 STSVCFKV----------DLSDEKLKELIKTLEKEKVAYDIGSYRDAPSGLRIWCGATVE 351
           STS+C KV          D     +K L+  L+ E VAYDIG+YRDAP+GLRIW GATVE
Sbjct: 306 STSICLKVVDPWFASQADDAQGALIKALVAKLDAEGVAYDIGAYRDAPAGLRIWGGATVE 365

Query: 352 KEDLECLCEWIEWAYNLVK 370
             D+E L  W++WAY   K
Sbjct: 366 TSDIEALLPWLDWAYAAAK 384


Lambda     K      H
   0.319    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 517
Number of extensions: 17
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 391
Length adjustment: 30
Effective length of query: 340
Effective length of database: 361
Effective search space:   122740
Effective search space used:   122740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_085123419.1 B9O00_RS14565 (phosphoserine transaminase)
to HMM TIGR01365 (phosphoserine aminotransferase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.29938.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29938.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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