Alignments for a candidate for astB in Billgrantia desiderata SP1

Align Succinylarginine dihydrolase (EC 3.5.3.23) (characterized)
to candidate WP_086508154.1 BZY95_RS01065 N-succinylarginine dihydrolase

Query= reanno::ANA3:7024550
         (444 letters)



>NCBI__GCF_002151265.1:WP_086508154.1
          Length = 451

 Score =  518 bits (1333), Expect = e-151
 Identities = 259/440 (58%), Positives = 323/440 (73%), Gaps = 2/440 (0%)

Query: 5   EANFDGLVGPTHNYAGLSFGNVASLNNAALVSNPKAAAKQGLQKAKALADLGMIQGMLAP 64
           E NFDGLVGPTHNY+GL+ GNVAS+ +  LVSNP+ AA QGL K KAL D G  QG+L P
Sbjct: 11  EVNFDGLVGPTHNYSGLAHGNVASMRHGGLVSNPREAALQGLAKMKALMDAGYAQGVLPP 70

Query: 65  QERPDLNTLRRIGFSGSDAQVLQQAAKTAPALLNACCSASSMWTANAATVSPSADTRDGK 124
           Q+RPDL  LR +GFSGS+ +VL +AAK AP +L A CSASSMWTANAATV+PS D  DG+
Sbjct: 71  QQRPDLGALRSLGFSGSNREVLARAAKEAPQVLRAVCSASSMWTANAATVTPSRDAADGR 130

Query: 125 LHFTPANLVDKLHRSIEPTTTGRILTATFNDPHYFHHHNHLPEHNSFGDEGAANHTRLCQ 184
           +HFTPANL    HR +EP TTGR+L A F    +F HH  LP   +F DEGAANHTRLC 
Sbjct: 131 VHFTPANLQSSFHRYLEPETTGRVLAAIFRHESHFAHHPALPATPAFSDEGAANHTRLCG 190

Query: 185 EYGHAGVELFVYGQEATNPNAPRPQKYPARQTLEASMAIARLHQLEEDNCVFIQQNPDVI 244
           E+G AGV L+VYG++A       P+++PARQTLEAS A+AR H L     VF QQ+P+ I
Sbjct: 191 EHGEAGVHLYVYGRQAFGGEV-GPKRFPARQTLEASQAVARQHGLAAAQTVFAQQHPEAI 249

Query: 245 DQGVFHNDVIAVGNQNVLFYHEQAFLNTQAKLDEIRRKLDTELFFIEVPTTKVAINNAVK 304
           D GVFHNDVIAVGN  VL YHE AFL+ QA LDE+R K+ T L  + VP+  V++++AV 
Sbjct: 250 DAGVFHNDVIAVGNGPVLLYHEMAFLDEQATLDELRAKMTTPLIPVRVPSEAVSMDDAVA 309

Query: 305 SYLFNTQIITLPSGEMAIIAPTDCQENPAVYAYLNELLTL-NTPIKQVLYFDVKQSMQNG 363
           SYLFN+Q+++ P G M ++ P +CQE  AV+  + +LL   + PI +V+  DVKQSM+NG
Sbjct: 310 SYLFNSQLLSNPDGSMTLVVPGECQEREAVWRTIQDLLLAGHNPIGEVIVKDVKQSMRNG 369

Query: 364 GGPACLRLRVAMNEREVAAANQHTLLNDALFARLNTWVDKHYRDRLSTQDLADPQLVVES 423
           GGPACLRLRV ++  E AA     LL+DAL+  L+ WV +HYRDRL+  DLADPQL  E+
Sbjct: 370 GGPACLRLRVVLSAEERAALTGRVLLSDALYGELSAWVGRHYRDRLAPDDLADPQLADET 429

Query: 424 RTALDELTQIMKLGSVYPFQ 443
            TALDELT+I+++GSVYPFQ
Sbjct: 430 LTALDELTRILQIGSVYPFQ 449


Lambda     K      H
   0.318    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 537
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 451
Length adjustment: 33
Effective length of query: 411
Effective length of database: 418
Effective search space:   171798
Effective search space used:   171798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_086508154.1 BZY95_RS01065 (N-succinylarginine dihydrolase)
to HMM TIGR03241 (astB: succinylarginine dihydrolase (EC 3.5.3.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.26671.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26671.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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