Alignments for a candidate for mmsA in Billgrantia desiderata SP1

Align Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (characterized)
to candidate WP_086508312.1 BZY95_RS01885 CoA-acylating methylmalonate-semialdehyde dehydrogenase

Query= reanno::psRCH2:GFF2388
         (503 letters)



>NCBI__GCF_002151265.1:WP_086508312.1
          Length = 499

 Score =  684 bits (1764), Expect = 0.0
 Identities = 338/497 (68%), Positives = 398/497 (80%)

Query: 6   SIPTVKLLIDGEFIESTTQDWRDVVNPATQEVLARVPFATAEEIDRAVASGQKAFKTWRK 65
           SI  + + IDG+ + S +Q+WRDV+NPATQEV+ARVPF TAEE+DRAVAS ++AFKTWRK
Sbjct: 2   SIREIPMYIDGQAVPSQSQEWRDVINPATQEVVARVPFCTAEEVDRAVASAKEAFKTWRK 61

Query: 66  TPIGARARIFLKYQQLIRENMKELAAILTAEQGKTLADAEGDVFRGLEVVEHAAGIGNLQ 125
           TP+  R RI L  Q LIRE+ +ELAA++T E GKTL DA G+V RGLEVVEHA  I +LQ
Sbjct: 62  TPLAKRMRIMLTLQALIREHTEELAALITEEHGKTLPDAAGEVGRGLEVVEHACSITSLQ 121

Query: 126 LGELANNVAAGVDTYTLLQPLGVCAGITPFNFPAMIPLWMFPMAIATGNTFVLKPSEQDP 185
           LGELA N A  VD YTL QPLGV AGIT FNFP M+P +MFP+AIATGNTFVLKPSEQDP
Sbjct: 122 LGELAENAANEVDVYTLNQPLGVGAGITAFNFPIMLPCFMFPLAIATGNTFVLKPSEQDP 181

Query: 186 MVTMRLCELALEAGVPPGVLNVVHGGPDVVNAICDHPDIKAVSFVGSTKVGTHVYNRASQ 245
             TMRL ELA EAGVP GVLNVVHGGPDV N ICDHPDIKA+SF+GST VGTH+Y RAS+
Sbjct: 182 SSTMRLVELAHEAGVPAGVLNVVHGGPDVANQICDHPDIKALSFIGSTNVGTHIYRRASE 241

Query: 246 AGKRVQCMMGAKNHAIVLPDAHKEQTLNNLAGAAFGAAGQRCMALSVVVLVGEAQAWIPD 305
           AGKRVQ MMGAKNH +V+PDA++ Q +NNL G+AFGAAGQRCMA SVVVLVGEA  W+ D
Sbjct: 242 AGKRVQSMMGAKNHCVVMPDANRSQAINNLLGSAFGAAGQRCMANSVVVLVGEANQWLDD 301

Query: 306 LVAKAQTLKVNAGVEAGTDVGPLVSCAALDRVSGLIERGVREGAKLELDGRNPSVSGYEN 365
           +V  A+ +KV  G +   D+GPLVS AA DRV  LI+ G +EGA+L +DGR   V GY +
Sbjct: 302 IVEGARNMKVGPGTQRDADLGPLVSKAARDRVVRLIDAGEKEGARLLVDGRGYQVEGYPD 361

Query: 366 GNFVGPTIFSGVTREMSVYQEEIFGPVLCVMAAATMDEAIELINANPNGNGTAIFTRSGA 425
           GNFVG T+F+ V  EM++Y+EEIFGPVLCV++  T+DEAI  INANPNGNGT+IFT SG 
Sbjct: 362 GNFVGATVFADVKPEMTIYREEIFGPVLCVVSVDTLDEAIAFINANPNGNGTSIFTNSGW 421

Query: 426 AARHFQEEIDVGQVGINVPIPVPVPMFSFTGSRASKLGDLGPYGKQVVQFYTQTKTITER 485
            AR F+ +IDVGQVGINVPIPVPV  FSFTGSR SKLGDLGP GKQ +QF+TQTKT+T R
Sbjct: 422 VARRFETDIDVGQVGINVPIPVPVAYFSFTGSRGSKLGDLGPNGKQAIQFWTQTKTVTAR 481

Query: 486 WFDENEVGGPVNTTINL 502
           WF+   V   +N+TI+L
Sbjct: 482 WFEPENVSSGINSTISL 498


Lambda     K      H
   0.318    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 743
Number of extensions: 32
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 499
Length adjustment: 34
Effective length of query: 469
Effective length of database: 465
Effective search space:   218085
Effective search space used:   218085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate WP_086508312.1 BZY95_RS01885 (CoA-acylating methylmalonate-semialdehyde dehydrogenase)
to HMM TIGR01722 (mmsA: methylmalonate-semialdehyde dehydrogenase (acylating) (EC 1.2.1.27))

Software error:

../bin/blast/fastacmd -i /tmp/list.23815.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23815.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.