Align dihydroxy-acid dehydratase (EC 4.2.1.9) (characterized)
to candidate WP_086508318.1 BZY95_RS01905 dihydroxy-acid dehydratase
Query= BRENDA::A0A481UJA7 (614 letters) >NCBI__GCF_002151265.1:WP_086508318.1 Length = 561 Score = 583 bits (1504), Expect = e-171 Identities = 300/553 (54%), Positives = 388/553 (70%), Gaps = 4/553 (0%) Query: 61 KYSSRITEPKSQGGSQAILHGVGLSDEDLNKPQIGISSVWYEGNTCNMHLLRLSEAVKEG 120 ++S+ + + + S+A+L VG SDED KPQ+GI+S W CN H+ L+E ++G Sbjct: 10 RHSAPVVDGVGKSASRAMLRAVGFSDEDFTKPQVGIASTWSMVTPCNSHIHELAERARDG 69 Query: 121 VKEAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDGNISIPGCD 180 AG G FNT+ +SD I+ GT GM YSL SR++IADSIETV + +DG ++I GCD Sbjct: 70 ADAAGGKGVIFNTVTISDGIANGTEGMKYSLVSREVIADSIETVAGCEGFDGLVAIGGCD 129 Query: 181 KNMPGTIMAMGRLNRPSIMVYGGTIKPGHYNGHSYDIISAFQAYGEYVNGSISDEDRKNV 240 KNMPG +M + RLNRPS+ VYGGTI+PG H+ DI+S F+A G + G + + K + Sbjct: 130 KNMPGCLMGLARLNRPSVFVYGGTIQPG--KNHT-DIVSVFEAMGAHSRGDLELIELKQI 186 Query: 241 VHNSCPGAGACGGMYTANTMASAIEAMGMCLPYSSSIPAENPLKLDECRLAGKYLLELLK 300 + PG G+CGGMYTANTMASAIEA+GM LP SS+ A + K D+C AG +LELL+ Sbjct: 187 EETAIPGPGSCGGMYTANTMASAIEALGMSLPGSSAQNAVSQAKRDDCEAAGAAVLELLE 246 Query: 301 MDLKPQNIITPQSLRNAMVVVMALGGSTNAVLHLIPIARSVGLELTLEDFQKVSDEVPFL 360 D+KP +I+T Q+ NA+ VV+ALGGSTNAVLHLI +A +VG+ L+L DF ++ VP L Sbjct: 247 RDIKPSDIMTRQAFENAVTVVIALGGSTNAVLHLIAMANTVGVPLSLVDFTEIGRRVPVL 306 Query: 361 ADLKPSGKYVMEDVHKIGGTPAVLRYLLEHGFLDGDCLTVTGKTLAENVQNCPPLSEGQD 420 ADL+PSG+Y+M ++ +IGG +++ LL+ G L GDCLTVTG+TLAEN+ N P + Q Sbjct: 307 ADLRPSGRYMMSELVEIGGIQPLMKTLLDAGLLHGDCLTVTGRTLAENLANVAPYPDDQK 366 Query: 421 IIRPLENPIKKTGHIQILQGNLAPEGSVAKITGKEGLYFSGPALVFEGEEAMLAAISENP 480 II L+ P+K H++IL GNLAPEG+VAKITGKEG FSG A VF EE A I++ Sbjct: 367 IIAALDAPLKAESHLRILFGNLAPEGAVAKITGKEGTRFSGTARVFGSEEEAQARINDGT 426 Query: 481 MNFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKDCALLTDGRFSGGSHGFVVGHI 540 + G VVVIR EGP+GGPGM EMLTPTSAIMG GLG AL+TDGRFSGGSHGFVVGH+ Sbjct: 427 V-VAGDVVVIRYEGPRGGPGMREMLTPTSAIMGRGLGDSVALITDGRFSGGSHGFVVGHV 485 Query: 541 CPEAQEGGPIGLVRNGDIIRIDVRERRIDVDVTDQEMEERRKNWTPPPYKATCGVLYKYI 600 PEA +GGP+ LV +GD+I ID IDVD++D+E+ RR W P + T GVL KY Sbjct: 486 TPEAFDGGPLALVEDGDMITIDAEADTIDVDLSDEELMRRRAAWQQPAPRYTRGVLAKYA 545 Query: 601 KNVQSASRGCVTD 613 + V SAS G VTD Sbjct: 546 RTVSSASTGAVTD 558 Lambda K H 0.316 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 966 Number of extensions: 38 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 614 Length of database: 561 Length adjustment: 37 Effective length of query: 577 Effective length of database: 524 Effective search space: 302348 Effective search space used: 302348 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate WP_086508318.1 BZY95_RS01905 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.14014.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14014.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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