Alignments for a candidate for pobA in Billgrantia desiderata SP1

Align p-hydroxybenzoate hydroxylase; PHBH; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 (characterized)
to candidate WP_086508579.1 BZY95_RS03375 4-hydroxybenzoate 3-monooxygenase

Query= SwissProt::P20586
         (394 letters)



>NCBI__GCF_002151265.1:WP_086508579.1
          Length = 394

 Score =  623 bits (1606), Expect = 0.0
 Identities = 303/394 (76%), Positives = 340/394 (86%)

Query: 1   MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAG 60
           MKTQVAIIGAGPSGLLLGQLL + GIDNVILER++ +YVL RIRAGVLEQGMVDLLREAG
Sbjct: 1   MKTQVAIIGAGPSGLLLGQLLSRQGIDNVILERKSGEYVLSRIRAGVLEQGMVDLLREAG 60

Query: 61  VDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATT 120
           VD RM  +GL H+GVE+AF  +R RIDL  L+GGKTV VYGQTEVTRDLMEAR A G TT
Sbjct: 61  VDARMNEEGLPHDGVELAFDNRRVRIDLAGLTGGKTVMVYGQTEVTRDLMEARAAGGGTT 120

Query: 121 VYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERV 180
           +Y+A  V+ HDL+ + PYVTF +DGE +RLDCDY+AGCDGFHG+SRQSIP +R+K FE++
Sbjct: 121 IYEADNVQPHDLETDAPYVTFVKDGETVRLDCDYVAGCDGFHGVSRQSIPKDRIKEFEKI 180

Query: 181 YPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSRYYVQVPLSEKVEDWSDERFW 240
           YPFGWLGLLADTPPVS ELIYA H RGFALCS RS TRSRYYVQVPL EKVEDWSDERFW
Sbjct: 181 YPFGWLGLLADTPPVSDELIYARHERGFALCSMRSPTRSRYYVQVPLDEKVEDWSDERFW 240

Query: 241 TELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLN 300
            ELK RLP EVA KLVTGP+LEKSIAPLRSFVVEPMQ+GRLFL GDAAHIVPPTGAKGLN
Sbjct: 241 AELKRRLPEEVAAKLVTGPALEKSIAPLRSFVVEPMQYGRLFLVGDAAHIVPPTGAKGLN 300

Query: 301 LAASDVSTLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFS 360
           LAASDV+TLYRL++K Y+EGR +L+  YS  CL+RIWKAERFSWWMTS+LH+F D + F 
Sbjct: 301 LAASDVNTLYRLMVKVYQEGRTDLIPNYSQTCLKRIWKAERFSWWMTSLLHKFSDEEGFE 360

Query: 361 QRIQQTELEYYLGSEAGLATIAENYVGLPYEEIE 394
            R+QQ EL+Y   SEAGL TIAENYVGLPYE +E
Sbjct: 361 TRMQQAELDYLTSSEAGLKTIAENYVGLPYESLE 394


Lambda     K      H
   0.321    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 585
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 394
Length adjustment: 31
Effective length of query: 363
Effective length of database: 363
Effective search space:   131769
Effective search space used:   131769
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_086508579.1 BZY95_RS03375 (4-hydroxybenzoate 3-monooxygenase)
to HMM TIGR02360 (pobA: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.9476.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9476.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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