Alignments for a candidate for hisA in Billgrantia desiderata SP1

Align 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate WP_086508672.1 BZY95_RS03885 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase

Query= reanno::psRCH2:GFF155
         (247 letters)



>NCBI__GCF_002151265.1:WP_086508672.1
          Length = 250

 Score =  380 bits (977), Expect = e-110
 Identities = 186/241 (77%), Positives = 209/241 (86%)

Query: 1   MLIIPAIDLKDGACVRLRQGLMDDATVFSDDPVAMAAKWVEAGCRRLHLVDLNGAFEGQP 60
           ML+IPAIDLKDG CVRL+QG MDDAT + DDPVAMAA+WVEAG RRLHLVDLNGAFEG+P
Sbjct: 1   MLVIPAIDLKDGKCVRLKQGRMDDATTYGDDPVAMAARWVEAGARRLHLVDLNGAFEGKP 60

Query: 61  VNGEVVTAIAKRYPDLPIQIGGGIRTLETIEHYVRAGVSYVIIGTKAVKEPGFVTEACRA 120
           +NGE VTAIA+R+P+LPIQIGGGIR+ ETIEHY+ AGVSYVIIGTKAVKEP FV E CRA
Sbjct: 61  INGEAVTAIARRWPELPIQIGGGIRSAETIEHYLAAGVSYVIIGTKAVKEPAFVGEVCRA 120

Query: 121 FPGKVIVGLDAKDGFVATDGWAEVSSVQAVDLARRFEADGVSAIVYTDIAKDGMMQGCNV 180
           FPG VIVGLDA+DGFVATDGWAEVS V+AVDLA+RF  DGVS+IVYTDIA+DGMM G NV
Sbjct: 121 FPGHVIVGLDARDGFVATDGWAEVSQVKAVDLAKRFADDGVSSIVYTDIARDGMMNGVNV 180

Query: 181 EATVALANASRIPVIASGGIHNIGDIQKLLDTNTPGIVGAITGRAIYEGTLDVAEAQALC 240
           EAT  LA    +PVIASGG+ N+ D++ L+    PGI+GAITGRAIYEGTLDVAE Q LC
Sbjct: 181 EATAELAREGGLPVIASGGVTNLDDLRALVAAGEPGILGAITGRAIYEGTLDVAEGQRLC 240

Query: 241 D 241
           D
Sbjct: 241 D 241


Lambda     K      H
   0.320    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 346
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 250
Length adjustment: 24
Effective length of query: 223
Effective length of database: 226
Effective search space:    50398
Effective search space used:    50398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)

Align candidate WP_086508672.1 BZY95_RS03885 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.1578.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1578.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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