Alignments for a candidate for maiA in Billgrantia desiderata SP1

Align Maleylacetoacetate isomerase (EC 5.2.1.2) (characterized)
to candidate WP_086509183.1 BZY95_RS06635 maleylacetoacetate isomerase

Query= reanno::psRCH2:GFF3446
         (219 letters)



>NCBI__GCF_002151265.1:WP_086509183.1
          Length = 214

 Score =  244 bits (623), Expect = 9e-70
 Identities = 130/215 (60%), Positives = 154/215 (71%), Gaps = 6/215 (2%)

Query: 6   TLYGYWRSSAAYRVRIALNLKGLAYRQVPVHLVKDGGQQRAADYRALNPQQLVPLLVDEG 65
           TLYGY+RSSAAYRVRIALNLKGLAY QV V+LVK  G+QRA +  A NPQ LVP+L  E 
Sbjct: 3   TLYGYFRSSAAYRVRIALNLKGLAYEQVAVNLVK--GEQRAEENLARNPQGLVPVL--ET 58

Query: 66  NGGARISQSLAILEYLDEVFPVPALLPADPVERAQVRSLAMHIACEIHPLNNLRVLQYLS 125
           + G R++QSLAI EYL+E  P PALLP DP  RA+VRSLA  +ACEIHPLNNL+VL+YL 
Sbjct: 59  DDGTRLTQSLAICEYLEERHPEPALLPGDPAGRARVRSLAQLVACEIHPLNNLKVLKYLV 118

Query: 126 AELGVDDEAKNAWYRHWVSQGLAAVEQGL--ETFGDKLSLNDRPGYLEACLVPQVYNARR 183
            EL +D+ AK AWYRHW+++G  A+E  L  E         D P   + CLVPQV+NA R
Sbjct: 119 HELKLDEAAKLAWYRHWIAEGFTALEARLSGEAATGAFCHGDSPSLADVCLVPQVFNAER 178

Query: 184 FACDLAAYPRILEIVARCETLPAFQQAAPEVQPDA 218
           F CDL+AYP I  I  RC  + AF +AAP  QPDA
Sbjct: 179 FECDLSAYPTIRRIAERCRAMEAFAKAAPGAQPDA 213


Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 199
Number of extensions: 9
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 214
Length adjustment: 22
Effective length of query: 197
Effective length of database: 192
Effective search space:    37824
Effective search space used:    37824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)

Align candidate WP_086509183.1 BZY95_RS06635 (maleylacetoacetate isomerase)
to HMM TIGR01262 (maiA: maleylacetoacetate isomerase (EC 5.2.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.24352.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24352.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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